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authorEric Wieser <wieser.eric@gmail.com>2017-04-11 23:34:44 +0100
committerEric Wieser <wieser.eric@gmail.com>2017-04-12 01:11:14 +0100
commit78a1837e4abdd308b9985740e41b2917f94d63c9 (patch)
tree3afed1c178efef0d0aa9b104587012ce2e9a9afa /benchmarks
parentd5cc7cdc8df4ce8a4c2b9a3b5ba7a09cfadb249d (diff)
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BENCH: Add some basic ma benchmarks
Diffstat (limited to 'benchmarks')
-rw-r--r--benchmarks/benchmarks/bench_ma.py93
1 files changed, 93 insertions, 0 deletions
diff --git a/benchmarks/benchmarks/bench_ma.py b/benchmarks/benchmarks/bench_ma.py
index d36bfabcd..d313f01dc 100644
--- a/benchmarks/benchmarks/bench_ma.py
+++ b/benchmarks/benchmarks/bench_ma.py
@@ -18,3 +18,96 @@ class MA(Benchmark):
def time_masked_array_l100_t100(self):
np.ma.masked_array(self.l100, self.t100)
+
+
+class Indexing(Benchmark):
+ param_names = ['masked', 'ndim', 'size']
+ params = [[True, False],
+ [1, 2],
+ [10, 100, 1000]]
+ def setup(self, masked, ndim, size):
+ x = np.arange(size**ndim).reshape(ndim * (size,))
+
+ if masked:
+ self.m = np.ma.array(x, mask=x%2 == 0)
+ else:
+ self.m = np.ma.array(x)
+
+ self.idx_scalar = (size//2,) * ndim
+ self.idx_0d = (size//2,) * ndim + (Ellipsis,)
+ self.idx_1d = (size//2,) * (ndim - 1)
+
+ def time_scalar(self, masked, ndim, size):
+ self.m[self.idx_scalar]
+
+ def time_0d(self, masked, ndim, size):
+ self.m[self.idx_0d]
+
+ def time_1d(self, masked, ndim, size):
+ self.m[self.idx_1d]
+
+
+class UFunc(Benchmark):
+ param_names = ['a_masked', 'b_masked', 'size']
+ params = [[True, False],
+ [True, False],
+ [10, 100, 1000]]
+
+ def setup(self, a_masked, b_masked, size):
+ x = np.arange(size).astype(np.uint8)
+
+ self.a_scalar = np.ma.masked if a_masked else 5
+ self.b_scalar = np.ma.masked if b_masked else 3
+
+ self.a_1d = np.ma.array(x, mask=x%2 == 0 if a_masked else np.ma.nomask)
+ self.b_1d = np.ma.array(x, mask=x%3 == 0 if b_masked else np.ma.nomask)
+
+ self.a_2d = self.a_1d.reshape(1, -1)
+ self.b_2d = self.a_1d.reshape(-1, 1)
+
+ def time_scalar(self, a_masked, b_masked, size):
+ np.ma.add(self.a_scalar, self.b_scalar)
+
+ def time_scalar_1d(self, a_masked, b_masked, size):
+ np.ma.add(self.a_scalar, self.b_1d)
+
+ def time_1d(self, a_masked, b_masked, size):
+ np.ma.add(self.a_1d, self.b_1d)
+
+ def time_2d(self, a_masked, b_masked, size):
+ # broadcasting happens this time
+ np.ma.add(self.a_2d, self.b_2d)
+
+
+class Concatenate(Benchmark):
+ param_names = ['mode', 'n']
+ params = [
+ ['ndarray', 'unmasked',
+ 'ndarray+masked', 'unmasked+masked',
+ 'masked'],
+ [2, 100, 2000]
+ ]
+
+ def setup(self, mode, n):
+ normal = np.zeros((n, n), int)
+ unmasked = np.ma.zeros((n, n), int)
+ masked = np.ma.array(normal, mask=True)
+
+ mode_parts = mode.split('+')
+ base = mode_parts[0]
+ promote = 'masked' in mode_parts[1:]
+
+ if base == 'ndarray':
+ args = 10 * (normal,)
+ elif base == 'unmasked':
+ args = 10 * (unmasked,)
+ else:
+ args = 10 * (masked,)
+
+ if promote:
+ args = args[:-1] + (masked,)
+
+ self.args = args
+
+ def time_it(self, mode, n):
+ np.ma.concatenate(self.args)