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Diffstat (limited to 'src/H5Fio.c')
-rw-r--r-- | src/H5Fio.c | 370 |
1 files changed, 370 insertions, 0 deletions
diff --git a/src/H5Fio.c b/src/H5Fio.c new file mode 100644 index 0000000..81fa514 --- /dev/null +++ b/src/H5Fio.c @@ -0,0 +1,370 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/*------------------------------------------------------------------------- + * + * Created: H5Fio.c + * Jan 10 2008 + * Quincey Koziol <koziol@hdfgroup.org> + * + * Purpose: File I/O routines. + * + *------------------------------------------------------------------------- + */ + +/****************/ +/* Module Setup */ +/****************/ + +#include "H5Fmodule.h" /* This source code file is part of the H5F module */ + + +/***********/ +/* Headers */ +/***********/ +#include "H5private.h" /* Generic Functions */ +#include "H5Eprivate.h" /* Error handling */ +#include "H5Fpkg.h" /* File access */ +#include "H5FDprivate.h" /* File drivers */ +#include "H5Iprivate.h" /* IDs */ +#include "H5PBprivate.h" /* Page Buffer */ + + +/****************/ +/* Local Macros */ +/****************/ + + +/******************/ +/* Local Typedefs */ +/******************/ + + +/********************/ +/* Package Typedefs */ +/********************/ + + +/********************/ +/* Local Prototypes */ +/********************/ + + +/*********************/ +/* Package Variables */ +/*********************/ + + +/*****************************/ +/* Library Private Variables */ +/*****************************/ + + +/*******************/ +/* Local Variables */ +/*******************/ + + + +/*------------------------------------------------------------------------- + * Function: H5F_block_read + * + * Purpose: Reads some data from a file/server/etc into a buffer. + * The data is contiguous. The address is relative to the base + * address for the file. + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Robb Matzke + * matzke@llnl.gov + * Jul 10 1997 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F_block_read(const H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, + hid_t dxpl_id, void *buf/*out*/) +{ + H5F_io_info2_t fio_info; /* I/O info for operation */ + H5FD_mem_t map_type; /* Mapped memory type */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + HDassert(f); + HDassert(f->shared); + HDassert(buf); + HDassert(H5F_addr_defined(addr)); + + /* Check for attempting I/O on 'temporary' file address */ + if(H5F_addr_le(f->shared->tmp_addr, (addr + size))) + HGOTO_ERROR(H5E_IO, H5E_BADRANGE, FAIL, "attempting I/O in temporary file space") + + /* Treat global heap as raw data */ + map_type = (type == H5FD_MEM_GHEAP) ? H5FD_MEM_DRAW : type; + + /* Set up the I/O info object */ + fio_info.f = f; + if(H5FD_MEM_DRAW == type) { + if(NULL == (fio_info.meta_dxpl = (H5P_genplist_t *)H5I_object(H5AC_ind_read_dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + if(NULL == (fio_info.raw_dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + } /* end if */ + else { + if(NULL == (fio_info.meta_dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + if(NULL == (fio_info.raw_dxpl = (H5P_genplist_t *)H5I_object(H5AC_rawdata_dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + } /* end else */ + + /* Pass through page buffer layer */ + if(H5PB_read(&fio_info, map_type, addr, size, buf) < 0) + HGOTO_ERROR(H5E_IO, H5E_READERROR, FAIL, "read through page buffer failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5F_block_read() */ + + +/*------------------------------------------------------------------------- + * Function: H5F_block_write + * + * Purpose: Writes some data from memory to a file/server/etc. The + * data is contiguous. The address is relative to the base + * address. + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Robb Matzke + * matzke@llnl.gov + * Jul 10 1997 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F_block_write(const H5F_t *f, H5FD_mem_t type, haddr_t addr, size_t size, + hid_t dxpl_id, const void *buf) +{ + H5F_io_info2_t fio_info; /* I/O info for operation */ + H5FD_mem_t map_type; /* Mapped memory type */ + herr_t ret_value = SUCCEED; /* Return value */ + + FUNC_ENTER_NOAPI(FAIL) + + HDassert(f); + HDassert(f->shared); + HDassert(H5F_INTENT(f) & H5F_ACC_RDWR); + HDassert(buf); + HDassert(H5F_addr_defined(addr)); + + /* Check for attempting I/O on 'temporary' file address */ + if(H5F_addr_le(f->shared->tmp_addr, (addr + size))) + HGOTO_ERROR(H5E_IO, H5E_BADRANGE, FAIL, "attempting I/O in temporary file space") + + /* Treat global heap as raw data */ + map_type = (type == H5FD_MEM_GHEAP) ? H5FD_MEM_DRAW : type; + + /* Set up the I/O info object */ + fio_info.f = f; + if(H5FD_MEM_DRAW == type) { + if(NULL == (fio_info.meta_dxpl = (H5P_genplist_t *)H5I_object(H5AC_ind_read_dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + if(NULL == (fio_info.raw_dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + } /* end if */ + else { + if(NULL == (fio_info.meta_dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + if(NULL == (fio_info.raw_dxpl = (H5P_genplist_t *)H5I_object(H5AC_rawdata_dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + } /* end else */ + + /* Pass through page buffer layer */ + if(H5PB_write(&fio_info, map_type, addr, size, buf) < 0) + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "write through page buffer failed") + +done: + FUNC_LEAVE_NOAPI(ret_value) +} /* end H5F_block_write() */ + + +/*------------------------------------------------------------------------- + * Function: H5F_flush_tagged_metadata + * + * Purpose: Flushes metadata with specified tag in the metadata cache + * to disk. + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Mike McGreevy + * September 9, 2010 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F_flush_tagged_metadata(H5F_t * f, haddr_t tag, hid_t dxpl_id) +{ + H5F_io_info2_t fio_info; /* I/O info for operation */ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Use tag to search for and flush associated metadata */ + if(H5AC_flush_tagged_metadata(f, tag, dxpl_id)<0) + HGOTO_ERROR(H5E_CACHE, H5E_CANTFLUSH, FAIL, "unable to flush tagged metadata") + + /* Set up I/O info for operation */ + fio_info.f = f; + if(NULL == (fio_info.meta_dxpl = (H5P_genplist_t *)H5I_object(dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + if(NULL == (fio_info.raw_dxpl = (H5P_genplist_t *)H5I_object(H5AC_rawdata_dxpl_id))) + HGOTO_ERROR(H5E_ARGS, H5E_BADTYPE, FAIL, "can't get property list") + + /* Flush and reset the accumulator */ + if(H5F__accum_reset(&fio_info, TRUE) < 0) + HGOTO_ERROR(H5E_IO, H5E_CANTRESET, FAIL, "can't reset accumulator") + + /* Flush file buffers to disk. */ + if(H5FD_flush(f->shared->lf, dxpl_id, FALSE) < 0) + HGOTO_ERROR(H5E_IO, H5E_WRITEERROR, FAIL, "low level flush failed") + +done: + FUNC_LEAVE_NOAPI(ret_value); +} /* end H5F_flush_tagged_metadata */ + + +/*------------------------------------------------------------------------- + * Function: H5F_evict_tagged_metadata + * + * Purpose: Evicts metadata from the cache with specified tag. + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Mike McGreevy + * September 9, 2010 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F_evict_tagged_metadata(H5F_t * f, haddr_t tag, hid_t dxpl_id) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_NOAPI(FAIL) + + /* Evict the object's metadata */ + if(H5AC_evict_tagged_metadata(f, tag, TRUE, dxpl_id) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_CANTEXPUNGE, FAIL, "unable to evict tagged metadata") + +done: + FUNC_LEAVE_NOAPI(ret_value); +} /* end H5F_evict_tagged_metadata */ + + +/*------------------------------------------------------------------------- + * Function: H5F__evict_cache_entries + * + * Purpose: To evict all cache entries except the pinned superblock entry + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Vailin Choi + * Dec 2013 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F__evict_cache_entries(H5F_t *f, hid_t dxpl_id) +{ + herr_t ret_value = SUCCEED; + + FUNC_ENTER_PACKAGE + + HDassert(f); + HDassert(f->shared); + + /* Evict all except pinned entries in the cache */ + if(H5AC_evict(f, dxpl_id) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_CANTEXPUNGE, FAIL, "unable to evict all except pinned entries") + +#ifndef NDEBUG +{ + unsigned status = 0; + uint32_t cur_num_entries; + + /* Retrieve status of the superblock */ + if(H5AC_get_entry_status(f, (haddr_t)0, &status) < 0) + HGOTO_ERROR(H5E_HEAP, H5E_CANTGET, FAIL, "unable to get entry status") + + /* Verify status of the superblock entry in the cache */ + if(!(status & H5AC_ES__IN_CACHE) || !(status & H5AC_ES__IS_PINNED)) + HGOTO_ERROR(H5E_HEAP, H5E_CANTGET, FAIL, "unable to get entry status") + + /* Get the number of cache entries */ + if(H5AC_get_cache_size(f->shared->cache, NULL, NULL, NULL, &cur_num_entries) < 0) + HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "H5AC_get_cache_size() failed.") + + /* Should be the only one left in the cache (the superblock) */ + if(cur_num_entries != 1) + HGOTO_ERROR(H5E_CACHE, H5E_SYSTEM, FAIL, "number of cache entries is not correct") +} +#endif /* NDEBUG */ + +done: + FUNC_LEAVE_NOAPI(ret_value); +} /* end H5F__evict_cache_entries() */ + + +/*------------------------------------------------------------------------- + * Function: H5F_get_checksums + * + * Purpose: Decode checksum stored in the buffer + * Calculate checksum for the data in the buffer + * + * Note: Assumes that the checksum is the last data in the buffer + * + * Return: Non-negative on success/Negative on failure + * + * Programmer: Vailin Choi + * Sept 2013 + * + *------------------------------------------------------------------------- + */ +herr_t +H5F_get_checksums(const uint8_t *buf, size_t buf_size, uint32_t *s_chksum/*out*/, uint32_t *c_chksum/*out*/) +{ + FUNC_ENTER_NOAPI_NOINIT_NOERR + + /* Check arguments */ + HDassert(buf); + HDassert(buf_size); + + /* Return the stored checksum */ + if(s_chksum) { + const uint8_t *chk_p; /* Pointer into raw data buffer */ + + /* Offset to the checksum in the buffer */ + chk_p = buf + buf_size - H5_SIZEOF_CHKSUM; + + /* Decode the checksum stored in the buffer */ + UINT32DECODE(chk_p, *s_chksum); + } /* end if */ + + /* Return the computed checksum for the buffer */ + if(c_chksum) + *c_chksum = H5_checksum_metadata(buf, buf_size - H5_SIZEOF_CHKSUM, 0); + + FUNC_LEAVE_NOAPI(SUCCEED) +} /* end H5F_get_chksums() */ + |