diff options
Diffstat (limited to 'hl/tools')
66 files changed, 10010 insertions, 0 deletions
diff --git a/hl/tools/CMakeLists.txt b/hl/tools/CMakeLists.txt new file mode 100644 index 0000000..9536517 --- /dev/null +++ b/hl/tools/CMakeLists.txt @@ -0,0 +1,6 @@ +cmake_minimum_required (VERSION 3.2.2) +PROJECT (HDF5_HL_TOOLS C CXX) + +add_subdirectory (${HDF5_HL_TOOLS_SOURCE_DIR}/gif2h5 ${HDF5_HL_TOOLS_BINARY_DIR}/gif2h5) + +add_subdirectory (${HDF5_HL_TOOLS_SOURCE_DIR}/h5watch ${HDF5_HL_TOOLS_BINARY_DIR}/h5watch) diff --git a/hl/tools/COPYING b/hl/tools/COPYING new file mode 100644 index 0000000..6497ace --- /dev/null +++ b/hl/tools/COPYING @@ -0,0 +1,13 @@ + + Copyright by The HDF Group and + The Board of Trustees of the University of Illinois. + All rights reserved. + + The files and subdirectories in this directory are part of HDF5. + The full HDF5 copyright notice, including terms governing use, + modification, and redistribution, is contained in the COPYING file + which can be found at the root of the source code distribution tree + or in https://support.hdfgroup.org/ftp/HDF5/releases. If you do + not have access to either file, you may request a copy from + help@hdfgroup.org. + diff --git a/hl/tools/Makefile.am b/hl/tools/Makefile.am new file mode 100644 index 0000000..5d814df --- /dev/null +++ b/hl/tools/Makefile.am @@ -0,0 +1,25 @@ +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +## +# +# Tools HDF5 Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# All subdirectories +SUBDIRS=gif2h5 h5watch + +include $(top_srcdir)/config/conclude.am diff --git a/hl/tools/Makefile.in b/hl/tools/Makefile.in new file mode 100644 index 0000000..8fbd45b --- /dev/null +++ b/hl/tools/Makefile.in @@ -0,0 +1,1430 @@ +# Makefile.in generated by automake 1.15 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994-2014 Free Software Foundation, Inc. + +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +# +# Tools HDF5 Makefile(.in) +# +VPATH = @srcdir@ +am__is_gnu_make = { \ + if test -z '$(MAKELEVEL)'; then \ + false; \ + elif test -n '$(MAKE_HOST)'; then \ + true; \ + elif test -n '$(MAKE_VERSION)' && test -n '$(CURDIR)'; then \ + true; \ + else \ + false; \ + fi; \ +} +am__make_running_with_option = \ + case $${target_option-} in \ + ?) ;; \ + *) echo "am__make_running_with_option: internal error: invalid" \ + "target option '$${target_option-}' specified" >&2; \ + exit 1;; \ + esac; \ + has_opt=no; \ + sane_makeflags=$$MAKEFLAGS; \ + if $(am__is_gnu_make); then \ + sane_makeflags=$$MFLAGS; \ + else \ + case $$MAKEFLAGS in \ + *\\[\ \ ]*) \ + bs=\\; 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The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +# + +############################################################################## +############################################################################## +### T E S T I N G ### +############################################################################## +############################################################################## + +# Make testfiles dir under build dir +file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + +# +# copy test files from source to build dir +# +HDFTEST_COPY_FILE("${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/testfiles/image1.gif" "${PROJECT_BINARY_DIR}/testfiles/image1.gif" "gif2h5_files") +HDFTEST_COPY_FILE("${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/testfiles/h52giftst.h5" "${PROJECT_BINARY_DIR}/testfiles/h52giftst.h5" "gif2h5_files") +HDFTEST_COPY_FILE("${HDF5_HL_TOOLS_GIF2H5_SOURCE_DIR}/testfiles/ex_image2.h5" "${PROJECT_BINARY_DIR}/testfiles/ex_image2.h5" "gif2h5_files") +add_custom_target(gif2h5_files ALL COMMENT "Copying files needed by gif2h5 tests" DEPENDS ${gif2h5_files_list}) + +# Remove any output file left over from previous test run +add_test ( + NAME HL_TOOLS-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + image1.gif + image1.h5 + image.gif + image24.gif +) + +add_test (NAME HL_TOOLS_gif2h5 COMMAND $<TARGET_FILE:gif2h5> testfiles/image1.gif image1.h5) +set_tests_properties (HL_TOOLS_gif2h5 PROPERTIES DEPENDS HL_TOOLS-clear-objects) + +add_test (NAME HL_TOOLS_h52gif COMMAND $<TARGET_FILE:h52gif> testfiles/h52giftst.h5 image1.gif -i image) +set_tests_properties (HL_TOOLS_h52gif PROPERTIES DEPENDS HL_TOOLS-clear-objects) + +add_test (NAME HL_TOOLS_h52gif_none COMMAND $<TARGET_FILE:h52gif> testfiles/h52giftst.h5 image.gif -i nosuch_image) +set_tests_properties (HL_TOOLS_h52gif_none PROPERTIES WILL_FAIL "true") +set_tests_properties (HL_TOOLS_h52gif_none PROPERTIES DEPENDS HL_TOOLS-clear-objects) + +#add_test (NAME HL_TOOLS_h52gifpal COMMAND $<TARGET_FILE:h52gif> testfiles/h52giftst.h5 image.gif -i palette) +#set_tests_properties (HL_TOOLS_h52gifpal PROPERTIES WILL_FAIL "true") + +add_test (NAME HL_TOOLS_h52gif24bits COMMAND $<TARGET_FILE:h52gif> testfiles/ex_image2.h5 image24.gif -i image24bitpixel) +set_tests_properties (HL_TOOLS_h52gif24bits PROPERTIES WILL_FAIL "true") +set_tests_properties (HL_TOOLS_h52gif24bits PROPERTIES DEPENDS HL_TOOLS-clear-objects) diff --git a/hl/tools/gif2h5/Makefile.am b/hl/tools/gif2h5/Makefile.am new file mode 100644 index 0000000..d30d66a --- /dev/null +++ b/hl/tools/gif2h5/Makefile.am @@ -0,0 +1,49 @@ +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +# +# HDF5 Library Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Include src and tools/lib directories +AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src + +# These are our main targets, the tools + +TEST_SCRIPT=h52giftest.sh +check_SCRIPTS=$(TEST_SCRIPT) + +bin_PROGRAMS=gif2h5 h52gif +noinst_PROGRAMS=h52gifgentst + +# Add h52gif and gif2h5 specific linker flags here +h52gif_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) +gif2h5_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) + +gif2h5_SOURCES=gif2hdf.c gif2mem.c decompress.c gifread.c writehdf.c + +h52gif_SOURCES=hdf2gif.c hdfgifwr.c + +h52gifgentst_SOURCES=h52gifgentst.c + +# Programs all depend on the hdf5 library, the tools library, and the HL +# library. +LDADD=$(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5) + +CHECK_CLEANFILES+=*.h5 +CHECK_CLEANFILES+=*.gif + +include $(top_srcdir)/config/conclude.am diff --git a/hl/tools/gif2h5/Makefile.in b/hl/tools/gif2h5/Makefile.in new file mode 100644 index 0000000..b950a06 --- /dev/null +++ b/hl/tools/gif2h5/Makefile.in @@ -0,0 +1,1504 @@ +# Makefile.in generated by automake 1.15 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994-2014 Free Software Foundation, Inc. + +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. 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The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +#include <stdio.h> +#include <stdlib.h> + +#include "gif.h" + +WORD iWIDE, iHIGH, eWIDE, eHIGH, expand, numcols, strip, nostrip; +unsigned long cols[256]; +char *cmd; + +FILE *fp; + +static WORD + XC = 0, YC = 0, /* Output X and Y coords of current pixel */ + InitCodeSize, /* Starting code size, used during Clear */ + CodeSize, /* Code size, read from GIF header */ + BytesPerScanline, /* Bytes per scanline in output raster */ + IWidth, IHeight; /* image dimensions */ +static int + BitOffset = 0, /* Bit Offset of next code */ + Pass = 0, /* Used by output routine if WORDerlaced pic */ + OutCount = 0, /* Decompressor output 'stack count' */ + Code, /* Value returned by ReadCode */ + MaxCode, /* limiting value for current code size */ + ClearCode, /* GIF clear code */ + EOFCode, /* GIF end-of-information code */ + CurCode, OldCode, InCode, /* Decompressor variables */ + FirstFree, /* First free code, generated per GIF spec */ + FreeCode, /* Decompressor, next free slot in hash table */ + FinChar, /* Decompressor variable */ + DataMask, /* AND mask for data size */ + ReadMask; /* Code AND mask for current code size */ + +/*MODIFICATIONS*/ +BYTE tempbyte[10]; +BYTE * tempBYTEptr[10]; +WORD tempint[10]; +WORD ImageCount = 0; +/*END MODIFICATION*/ + +boolean Interlace, HasColormap; + +BYTE *Image; /* The result array */ +BYTE *RawGIF; /* The heap array to hold it, raw */ +BYTE *Raster; /* The raster data stream, unblocked */ + +/* The hash table used by the decompressor */ + +int Prefix[4096]; +int Suffix[4096]; + +/* An output array used by the decompressor */ + +int OutCode[1025]; + +/* The color map, read from the GIF header */ + +int numused; + +/* + * Fetch the next code from the raster data stream. The codes can be any + * length from 3 to 12 bits, packed WORDo 8-bit BYTEs, so we have to maWORDain + * our location in the Raster array as a BIT Offset. We compute the BYTE + * Offset WORDo the raster array by dividing this by 8, pick up three BYTEs, + * compute the bit Offset WORDo our 24-bit chunk, shift to bring the desired + * code to the bottom, then mask it off and return it. + */ +static int +ReadCode(void) +{ + int RawCode, ByteOffset; + + ByteOffset = BitOffset / 8; + RawCode = Raster[ByteOffset] + (0x100 * Raster[ByteOffset + 1]); + + if (CodeSize >= 8) + RawCode += (0x10000 * Raster[ByteOffset + 2]); + + RawCode >>= (BitOffset % 8); + BitOffset += (int)CodeSize; + return (RawCode & ReadMask); +} + +static void +AddToPixel(BYTE Index) +{ + if (YC<IHeight) + *(Image + YC * BytesPerScanline + XC) = Index; + + + + /* Update the X-coordinate, and if it overflows, update the + * Y-coordinate */ + if (++XC == IWidth) { + /* + * If a non-WORDerlaced picture, just increment YC to the next scan + * line. If it's WORDerlaced, deal with the WORDerlace as described + * in the GIF spec. Put the decoded scan line out to the screen if we + * haven't gone past the bottom of it. + */ + XC = 0; + + if (!Interlace) { + YC++; + } else { + switch (Pass) { + case 0: + YC += 8; + + if (YC >= IHeight) { + Pass++; + YC = 4; + } + + break; + case 1: + YC += 8; + + if (YC >= IHeight) { + Pass++; + YC = 2; + } + + break; + case 2: + YC += 4; + + if (YC >= IHeight) { + Pass++; + YC = 1; + } + + break; + case 3: + YC += 2; + break; + default: + break; + } + } + } +} + +/* Main routine. Convert a GIF image to an HDF image */ + +BYTE * +Decompress(GIFIMAGEDESC *GifImageDesc, GIFHEAD *GifHead) +{ + int i; + + XC = 0; + YC = 0; + Pass = 0; + OutCount = 0; + BitOffset = 0; + + DataMask = (1 << ((GifHead->PackedField & 0x07) +1)) -1; + Raster = GifImageDesc->GIFImage; + + /* Check for image seperator */ + + /* Now read in values from the image descriptor */ + IWidth = GifImageDesc->ImageWidth; + IHeight = GifImageDesc->ImageHeight; + Interlace = GifImageDesc->PackedField & 0x40; + + /* + * Note that I ignore the possible existence of a local color map. I'm + * told there aren't many files around that use them, and the spec says + * it's defined for future use. This could lead to an error reading some + * files. + */ + + /* + * Start reading the raster data. First we get the WORDial code size and + * compute decompressor constant values, based on this code size. + */ + + CodeSize = GifImageDesc->CodeSize; + ClearCode = (1 << CodeSize); + EOFCode = ClearCode + 1; + FreeCode = FirstFree = ClearCode + 2; + + /* + * The GIF spec has it that the code size is the code size used to compute + * the above values is the code size given in the file, but the code size + * used in compression/decompression is the code size given in the file + * plus one. (thus the ++). + */ + + CodeSize++; + InitCodeSize = CodeSize; + MaxCode = (1 << CodeSize); + ReadMask = MaxCode - 1; + + /* + * Read the raster data. Here we just transpose it from the GIF array to + * the Raster array, turning it from a series of blocks WORDo one long + * data stream, which makes life much easier for ReadCode(). + */ + + /* Allocate the Image */ + + if (!(Image = (BYTE *)malloc((size_t)IWidth*(size_t)IHeight))) { + printf("Out of memory"); + exit(EXIT_FAILURE); + } + + BytesPerScanline = IWidth; + + /* + * Decompress the file, continuing until you see the GIF EOF code. One + * obvious enhancement is to add checking for corrupt files here. + */ + + Code = ReadCode(); + + while (Code != EOFCode) { + /* + * Clear code sets everything back to its initial value, then reads + * the immediately subsequent code as uncompressed data. + */ + if (Code == ClearCode) { + CodeSize = InitCodeSize; + MaxCode = (1 << CodeSize); + ReadMask = MaxCode - 1; + FreeCode = FirstFree; + CurCode = OldCode = Code = ReadCode(); + FinChar = CurCode & DataMask; + AddToPixel((BYTE)FinChar); + } else { + /* + * If not a clear code, then must be data: save same as CurCode + * and InCode + */ + CurCode = InCode = Code; + + /* + * If greater or equal to FreeCode, not in the hash table yet; + * repeat the last character decoded + */ + if (CurCode >= FreeCode) { + CurCode = OldCode; + OutCode[OutCount++] = FinChar; + } + + /* + * Unless this code is raw data, pursue the chain poWORDed to by + * CurCode through the hash table to its end; each code in the + * chain puts its associated output code on the output queue. + */ + while (CurCode > DataMask) { + if (OutCount > 1024) { + /*return error message*/ + } + + OutCode[OutCount++] = Suffix[CurCode]; + CurCode = Prefix[CurCode]; + } + + /* The last code in the chain is treated as raw data. */ + FinChar = CurCode & DataMask; + OutCode[OutCount++] = FinChar; + + /* + * Now we put the data out to the Output routine. It's been + * stacked LIFO, so deal with it that way... + */ + for (i = OutCount - 1; i >= 0; i--) + AddToPixel((BYTE)OutCode[i]); + + OutCount = 0; + + /* + * Build the hash table on-the-fly. No table is stored in the + * file. + */ + Prefix[FreeCode] = OldCode; + Suffix[FreeCode] = FinChar; + OldCode = InCode; + + /* + * PoWORD to the next slot in the table. If we exceed the current + * MaxCode value, increment the code size unless it's already 12. + * If it is, do nothing: the next code decompressed better be + * CLEAR + */ + FreeCode++; + + if (FreeCode >= MaxCode) + if (CodeSize < 12) { + CodeSize++; + MaxCode *= 2; + ReadMask = (1 << CodeSize) - 1; + } + } + + Code = ReadCode(); + } + + return Image; +} diff --git a/hl/tools/gif2h5/gif.h b/hl/tools/gif2h5/gif.h new file mode 100644 index 0000000..ed1cc81 --- /dev/null +++ b/hl/tools/gif2h5/gif.h @@ -0,0 +1,180 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * Title: GIF.H + * Purpose: GIF Header file + */ +#ifndef GIF_H_ +#define GIF_H_ 1 + +#include <stdio.h> +#include <stdlib.h> +#include <string.h> + +#include "hdf5.h" + +#define MAX_PAL 768 + +/* typedef H5T_NATIVE_UINT8 BYTE; */ +typedef unsigned char BYTE; + +/* typedef H5T_NATIVE_UINT16 WORD; */ +typedef unsigned long WORD; + +typedef char CHAR; +typedef unsigned char boolean; + +#define false 0 +#define true 1 + +/* Set the EndianOrder. +** The GIF Reader file should do this. +** Set EndianOrder = 0 if machine is little endian +** EndianOrder = 1 if machine is big endian. +*/ +extern int EndianOrder; + +/* +** The GIF header format. +** +** This structure actually contains the header, logical screen +** descriptor, and the global color table for the GIF image. +*/ +typedef struct _GifHeader { /* Offset Description */ + BYTE PackedField; /* 0Ah Color Information */ + WORD TableSize; + BYTE ImageCount; /* Keep a count of the number of images */ + BYTE CommentCount; + BYTE ApplicationCount; + BYTE PlainTextCount; + BYTE HDFPalette[256][3]; + BYTE HeaderDump[6]; /* BYTE array to dump header contents */ + BYTE LSDDump[7]; /* Logical Screen Descriptor dump */ +} GIFHEAD; + + +/* +** The GIF Image Descriptor. +*/ +typedef struct _GifImageDescriptor { + WORD ImageWidth; /* Width of the image in pixels */ + WORD ImageHeight; /* Height of the image in pixels */ + BYTE PackedField; /* Image and Color Table Data Information */ + WORD TableSize; + WORD CodeSize; /* Minimum LZW CodeSize for image data */ + BYTE HDFPalette[256][3]; + BYTE GIDDump[9]; /* GifImageDescriptor dump */ + + BYTE *Image; /* Decompressed Raster Image */ + BYTE *GIFImage; +} GIFIMAGEDESC; + +/* +** GIF 89a Graphic Control Extension Block +*/ +typedef struct _GifGraphicControlExtension { + BYTE GCEDump[5]; /* Graphic Control Extension Dump */ +} GIFGRAPHICCONTROL; + +/* +** GIF 89a Plain Text Extension Block +*/ +typedef struct _GifPlainTextExtension { + BYTE PTEDump[15]; /* Plain Text Extension Dump */ + BYTE *PlainTextData; /* Plain Text data sub-blocks */ + WORD DataSize; +} GIFPLAINTEXT; + + +/* +** GIF 89a Application Extension Block +*/ +typedef struct _GifApplicationExtension { + BYTE AEDump[14]; /* Application Extension Dump */ + BYTE *ApplicationData; /* Application data sub-blocks */ + WORD DataSize; +} GIFAPPLICATION; + +/* +** GIF 89a Comment Extension Block +*/ +typedef struct _GifCommentExtension { + BYTE CEDump[2]; /* Comment Extension Dump */ + BYTE *CommentData; /* Comment data sub-blocks */ + WORD DataSize; + BYTE Terminator; /* Block Terminator (always 0) */ +} GIFCOMMENT; + +/* +** GIF to HDF Memory Struct +** Purpose : The gif to hdf structure is used to pass all the +** gif data to the memory, which gets caught by the hdf driver +** Its the drivers job to put the data in the appropriate places +** in the HDF file. +** I have assumed that the ImageDescriptors and GraphicControls follow +** one another, ie. I have not associated them with each other. The driver +** must assume a 1-1 correspondance. The same discussion with plain text +** extension. +*/ +typedef struct _GifToMem { + GIFHEAD *GifHeader; + GIFIMAGEDESC **GifImageDesc; + GIFGRAPHICCONTROL **GifGraphicControlExtension; + GIFPLAINTEXT **GifPlainTextExtension; + GIFAPPLICATION **GifApplicationExtension; + GIFCOMMENT **GifCommentExtension; +} GIFTOMEM; + +/* +** Function Prototypes +*/ + +/* GIF2MEM.C */ +int Gif2Mem(BYTE *, GIFTOMEM *); + +/* GIFREAD.C */ +int ReadGifHeader(GIFHEAD *, BYTE **); +int ReadGifImageDesc(GIFIMAGEDESC *, BYTE **); +int ReadGifGraphicControl(GIFGRAPHICCONTROL *, BYTE **); +int ReadGifPlainText(GIFPLAINTEXT *, BYTE **); +int ReadGifApplication(GIFAPPLICATION *, BYTE **); +int ReadGifComment(GIFCOMMENT *, BYTE **); + +/* HDFGIFWR.C */ +int hdfWriteGIF(FILE *fp, BYTE *pic, int ptype, int w, int h, BYTE *rmap, + BYTE *gmap, BYTE *bmap, BYTE *pc2ncmap, int numcols, + int colorstyle, int BitsPerPixel); + +/* WRITEHDF.C */ +int WriteHDF(GIFTOMEM , CHAR * ); + +/* Function: ReadHDF +** Return: 0 on completion without error, -1 on error +** Input: CHAR *h5_file - HDF file name +** CHAR *dset_name - Name of the HDF Image dataset +** CHAR *pal_name - Name of the HDF palette +** Output: BYTE* data - the HDF Image to be converted +** BYTE palette[256][3] - the corresponding palette +** hsize_t* image_size - the size of each dimension of the image +*/ +int ReadHDF(BYTE** data, BYTE palette[256][3], hsize_t *image_size, + CHAR *h5_file, CHAR *dset_name, CHAR *pal_name); + +BYTE *Decompress(GIFIMAGEDESC *, GIFHEAD *); +BYTE GetByte(BYTE *); +WORD GetWord(BYTE *); + +void cleanup(BYTE*); + +#endif /* GIF_H_ */ diff --git a/hl/tools/gif2h5/gif2hdf.c b/hl/tools/gif2h5/gif2hdf.c new file mode 100644 index 0000000..2e06d34 --- /dev/null +++ b/hl/tools/gif2h5/gif2hdf.c @@ -0,0 +1,163 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +#include <string.h> +#include <stdio.h> +#include <stdlib.h> + +#include "gif.h" +#include "h5tools.h" +#include "h5tools_utils.h" + + +int +main(int argv , char *argc[]) +{ + GIFTOMEM GifMemoryStruct; + GIFIMAGEDESC gifImageDesc; + + FILE *fpGif; + + /* replacing int32 with long */ + long i, ImageCount; + long filesize; + + BYTE *MemGif; + BYTE *StartPos; + + char *GIFFileName; + char *HDFFileName; + + /* + * Initialize all GifMemoryStruct pointers to null to prevent hassles + * later on + */ + GifMemoryStruct.GifHeader = NULL; + GifMemoryStruct.GifImageDesc = NULL; + GifMemoryStruct.GifGraphicControlExtension = NULL; + GifMemoryStruct.GifPlainTextExtension = NULL; + GifMemoryStruct.GifApplicationExtension = NULL; + GifMemoryStruct.GifCommentExtension = NULL; + + /* Initialize h5tools lib */ + h5tools_init(); + + if ( argc[1] && (strcmp("-V",argc[1])==0) ) + { + print_version("gif2h5"); + exit(EXIT_SUCCESS); + + } + + if (argv < 3) { + printf("Usage: gif2h5 <GIFFILE> <HDFFILE>\n"); + fprintf(stdout, " gif2h5 -V \n"); + fprintf(stdout, " Print HDF5 library version and exit\n"); + exit(EXIT_FAILURE); + } + + GIFFileName = argc[1]; + HDFFileName = argc[2]; + + if (!(fpGif = fopen(GIFFileName,"rb"))) { + printf("Unable to open GIF file for reading.\n"); + exit(EXIT_FAILURE); + } + + /* Get the whole file into memory. Mem's much faster than I/O */ + fseek(fpGif, 0L , 2); + filesize = ftell(fpGif); + fseek(fpGif, 0L , 0); + + if (filesize == 0) + printf("File Size Zero"); + + if (!(MemGif = StartPos = (BYTE *)malloc((size_t)filesize))) { + printf("Out of memory"); + exit(EXIT_FAILURE); + } + + if (fread(MemGif,(size_t)filesize,1,fpGif) != 1) { + printf("Corrupted Input File"); + exit(EXIT_FAILURE); + } + + fseek(fpGif,0L,0); + + /* + * Call Gif2Mem and break the whole file into parts. Gif2Mem also calls + * decompresses the images so we don't have to worry about that + */ + Gif2Mem(MemGif, &GifMemoryStruct); + + if (ferror(fpGif)) { + printf("File Stream Error\n\n"); + exit(EXIT_FAILURE); + } + + fclose(fpGif); + + /* + * Call WriteHDF from here. Go ahead and change WriteHDF to write whatever + * format you want + */ + if (WriteHDF(GifMemoryStruct , HDFFileName)) + printf("HDF Write Error\n\n"); + + /* Free all buffers */ + /* replacing int32 with long */ + ImageCount = (long)((GifMemoryStruct.GifHeader)->ImageCount); + + for(i = 0; i < ImageCount ; i++) { + gifImageDesc = *(GifMemoryStruct.GifImageDesc[i]); + + if (gifImageDesc.Image != NULL) + free(gifImageDesc.Image); + + if (GifMemoryStruct.GifImageDesc[i] != NULL) + { + free(GifMemoryStruct.GifImageDesc[i]); + GifMemoryStruct.GifImageDesc[i] = NULL; + } + + if (GifMemoryStruct.GifGraphicControlExtension[i] != NULL) + { + free(GifMemoryStruct.GifGraphicControlExtension[i]); + GifMemoryStruct.GifGraphicControlExtension[i] = NULL; + } + } + + free(StartPos); + if (GifMemoryStruct.GifHeader != NULL) + { + free(GifMemoryStruct.GifHeader); + GifMemoryStruct.GifHeader = NULL; + } + if (GifMemoryStruct.GifApplicationExtension != NULL) + { + free(GifMemoryStruct.GifApplicationExtension); + GifMemoryStruct.GifApplicationExtension = NULL; + } + if (GifMemoryStruct.GifImageDesc != NULL) + { + free(GifMemoryStruct.GifImageDesc); + GifMemoryStruct.GifImageDesc = NULL; + } + if (GifMemoryStruct.GifGraphicControlExtension != NULL) + { + free(GifMemoryStruct.GifGraphicControlExtension); + GifMemoryStruct.GifGraphicControlExtension = NULL; + } + + + return EXIT_SUCCESS; +} diff --git a/hl/tools/gif2h5/gif2mem.c b/hl/tools/gif2h5/gif2mem.c new file mode 100644 index 0000000..40b5583 --- /dev/null +++ b/hl/tools/gif2h5/gif2mem.c @@ -0,0 +1,339 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * This file contains snippets of code from James Murray's original file to + * display the GIF header information, but most of it has been modified to + * suit gif2hdf + */ + +/****************************************************************************\ +** Title: GIFHEAD.C ** +** Purpose: Display the data in a GIF image file. ** +** Version: 1.0 ** +** Date: March 1992 ** +** Author: James D. Murray, Anaheim, CA, USA ** +** C Compilers: Borland C++ v2.0, Microsoft C v6.00a ** +** ** +** GIFHEAD displays all real information contained within a GIF image ** +** file, including all color tables and extension block information. ** +** GIFHEAD reads both GIF 87a abd 89a-format files. ** +** ** +** Copyright (C) 1991-92 by Graphics Software Labs. All rights reserved. ** +\****************************************************************************/ +#include <stdio.h> + +#include "gif.h" + +int +Gif2Mem(BYTE *MemGif, GIFTOMEM *GifMemoryStruct) +{ + /* + * The gif structure outline for passing data to memory is given in gif.h. + * These pointers are redunant, should take them out in ver. 2 + */ + GIFHEAD *gifHead; /* GIF Header structure */ + GIFIMAGEDESC **gifImageDesc; /* Logical Image Descriptor struct */ + GIFPLAINTEXT **gifPlainText; /* Plain Text Extension structure */ + GIFAPPLICATION **gifApplication; /* Application Extension structure */ + GIFCOMMENT **gifComment; /* Comment Extension structure */ + GIFGRAPHICCONTROL **gifGraphicControl; /* Graphic Control Extension strct */ + + register WORD i; /* Loop counter */ + BYTE Identifier; /* Extension block identifier holder */ + BYTE Label; /* Extension block label holder */ + BYTE ImageCount; /* Count of the number of images in the file */ + BYTE ImageArray; /* Keep the size of the array to store Images */ + BYTE CommentCount; + BYTE CommentArray; + BYTE ApplicationCount; + BYTE ApplicationArray; + BYTE PlainTextCount; + BYTE PlainTextArray; + BYTE GCEflag; + BYTE aTemp; + BYTE j; + BYTE w; /* Two more variables needed only while testing */ + BYTE *b; /* Endian Ordering */ + + /* Allocate memory for the GIF structures */ + /* Plug the structs into GifMemoryStruct at the end */ + /****************************************************/ + if (!(gifHead = (GIFHEAD *)malloc(sizeof(GIFHEAD)))) { + printf("Could not allocate memory for gifHead\n"); + exit(EXIT_FAILURE); + } + + /* + * The next three have to grow dynamically so we leave them for now and + * let realloc handle it later on. + */ + gifImageDesc = NULL; + gifPlainText = NULL; + gifGraphicControl = NULL; + gifComment = NULL; + gifApplication = NULL; + + /******************************/ + /* Memory allocation complete */ + /******************************/ + + /* Carry out Endian Testing and set Endian Order */ + w = 0x0001; + b = (BYTE *) &w; + EndianOrder = (b[0] ? 1 : 0); + + /* Read the GIF image file header information */ + ReadGifHeader(gifHead, &MemGif); + + /* Check for FILE stream error */ +#if 0 + if (ferror(fpGif)) + { + fputs("GIFHEAD: Error reading header information!\n", stderr); + exit(EXIT_FAILURE); + } +#endif /* 0 */ + + /* + * Identify, read, and display block information. + */ + ImageCount = ImageArray = 0; + CommentCount = CommentArray = 0; + ApplicationCount = ApplicationArray = 0; + PlainTextCount = PlainTextArray = 0; + GCEflag = 0; + + for (;;) { + Identifier = *MemGif++; + + switch (Identifier) { + case 0x3B: /* Trailer */ + /* + * The counts are stored to make it easier while putting stuff + * into the HDF file and then deallocating space. + */ + gifHead->ImageCount = ImageCount; + gifHead->CommentCount = CommentCount; + gifHead->ApplicationCount = ApplicationCount; + gifHead->PlainTextCount = PlainTextCount; + + /* putting stuff into the gif2mem structure */ + GifMemoryStruct->GifHeader = gifHead; + GifMemoryStruct->GifImageDesc = gifImageDesc; + GifMemoryStruct->GifPlainTextExtension = gifPlainText; + GifMemoryStruct->GifApplicationExtension = gifApplication; + GifMemoryStruct->GifCommentExtension = gifComment; + GifMemoryStruct->GifGraphicControlExtension = gifGraphicControl; + + /* return the struct */ + return 0; + + case 0x2C: /* Image Descriptor */ + /* + * If there was no image descriptor before this increase image + * count. If an imagedescriptor was present, reset GCEflag + */ + if (GCEflag == 0) + ImageCount++; + else + GCEflag = 0; + + if (ImageCount > ImageArray) { + aTemp = ImageArray; + ImageArray = (BYTE)((ImageArray << 1) + 1); + if (!(gifImageDesc = (GIFIMAGEDESC **)realloc(gifImageDesc, + sizeof(GIFIMAGEDESC *) * ImageArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + if (!(gifGraphicControl = (GIFGRAPHICCONTROL **)realloc( + gifGraphicControl, + sizeof(GIFGRAPHICCONTROL *) * ImageArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + for (j = aTemp ; j < ImageArray ; j++) { + gifGraphicControl[j] = NULL; + gifImageDesc[j] = NULL; + } + } + + if(!(gifImageDesc[ImageCount-1] = (GIFIMAGEDESC*)malloc(sizeof(GIFIMAGEDESC)))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + + if (ReadGifImageDesc(gifImageDesc[ImageCount-1], &MemGif) == -1) + fputs("Error reading Image Descriptor information\n", stderr); + + /* Decompress the Image */ + gifImageDesc[ImageCount-1]->Image = Decompress(gifImageDesc[ImageCount-1], + gifHead); + free(gifImageDesc[ImageCount-1]->GIFImage); + + /* + * Convert the local palette into an HDF compatible palette In + * case the local color table is present, it is written out as + * the HDFPalette If it is absent the global table is written + * as the HDFPalette. + */ + if (!((gifImageDesc[ImageCount-1]->PackedField) & 0x80)) { + /* Check to see if the global color table exists.... */ + if (gifHead->PackedField & 0x80) { + for (i=0 ; i<gifHead->TableSize ; i++) { + gifImageDesc[ImageCount-1]->HDFPalette[i][0] = + gifHead->HDFPalette[i][0]; + gifImageDesc[ImageCount-1]->HDFPalette[i][1] = + gifHead->HDFPalette[i][1]; + gifImageDesc[ImageCount-1]->HDFPalette[i][2] = + gifHead->HDFPalette[i][2]; + } + } + + gifImageDesc[ImageCount-1]->TableSize = gifHead->TableSize; + } + + break; + + case 0x21: /* Extension Block */ + Label = *MemGif++; + + switch (Label) { + case 0x01: /* Plain Text Extension */ + puts("Plain Text Extension\n"); + PlainTextCount++; + + if (PlainTextCount > PlainTextArray) + PlainTextArray = (BYTE)((PlainTextArray << 1) + 1); + + if (!(gifPlainText = (GIFPLAINTEXT **)realloc(gifPlainText , sizeof(GIFPLAINTEXT *) * PlainTextArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + if(!(gifPlainText[PlainTextCount - 1] = (GIFPLAINTEXT*)malloc(sizeof(GIFPLAINTEXT)))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + if (ReadGifPlainText(gifPlainText[PlainTextCount - 1], &MemGif)) + fprintf(stderr, + "Error reading Plain Text Extension information.\n"); + + break; + + case 0xFE: /* Comment Extension */ + CommentCount++; + + if (CommentCount > CommentArray) + CommentArray = (BYTE)((CommentArray << 1) + 1); + + if (!(gifComment = (GIFCOMMENT **)realloc(gifComment , sizeof(GIFCOMMENT *) * CommentArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + if(!(gifComment[CommentCount - 1] = (GIFCOMMENT *)malloc(sizeof(GIFCOMMENT)))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + + if (ReadGifComment(gifComment[CommentCount - 1], &MemGif)) + fprintf(stderr, + "Error reading Comment Extension information\n"); + + break; + + case 0xF9: /* Graphic Control Extension */ + if (GCEflag == 0 ) + ImageCount++; + + GCEflag = 1; + + if (ImageCount > ImageArray) { + aTemp = ImageArray; + ImageArray = (BYTE)((ImageArray << 1) + 1); + + if (!(gifGraphicControl = (GIFGRAPHICCONTROL **)realloc(gifGraphicControl , sizeof(GIFGRAPHICCONTROL *) * ImageArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + if (!(gifImageDesc = (GIFIMAGEDESC **)realloc(gifImageDesc , sizeof(GIFIMAGEDESC *) * ImageArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + for (j = aTemp ; j < ImageArray ; j++) { + gifGraphicControl[j] = NULL; + gifImageDesc[j] = NULL; + } + } + + if(!(gifGraphicControl[ImageCount-1] = (GIFGRAPHICCONTROL*)malloc(sizeof(GIFGRAPHICCONTROL)))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + + if (ReadGifGraphicControl(gifGraphicControl[ImageCount-1], &MemGif)) + fprintf(stderr, + "Error reading Graphic Control Extension information\n"); + + if (!*MemGif++ == 0) + fprintf(stderr, + "Error reading Graphic Control Extension\n"); + + break; + + case 0xFF: /* Application Extension */ + ApplicationCount++; + + if (ApplicationCount > ApplicationArray) + ApplicationArray = (BYTE)((ApplicationArray << 1) + 1); + + if (!(gifApplication = (GIFAPPLICATION **)realloc(gifApplication , sizeof(GIFAPPLICATION *) * ApplicationArray))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + if(!(gifApplication[ApplicationCount - 1] = (GIFAPPLICATION *)malloc(sizeof(GIFAPPLICATION)))) { + printf("Out of memory!"); + exit(EXIT_FAILURE); + } + + + if (ReadGifApplication(gifApplication[ApplicationCount - 1], &MemGif)) + fprintf(stderr, + "Error reading Application Extension information\n"); + + break; + + default: + printf("Unknown Extension Label: 0x%02x\n", Label); + break; + } + + break; + + default: + fprintf(stderr, + "Unknown Block Separator Character: 0x%02x\n", Identifier); + } + } +} diff --git a/hl/tools/gif2h5/gifread.c b/hl/tools/gif2h5/gifread.c new file mode 100644 index 0000000..948e112 --- /dev/null +++ b/hl/tools/gif2h5/gifread.c @@ -0,0 +1,401 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +#include <stdio.h> +#include <stdlib.h> + +#include "gif.h" + +int EndianOrder; + +static BYTE *ReadDataSubBlocks(BYTE **MemGif2, WORD *DSize); + +WORD +GetWord(BYTE *MemGif) +{ + WORD w; + + if (EndianOrder == 1) { + /* LittleEndian */ + w = (WORD) (*MemGif++ & 0xFF); + w |= (WORD) ((*MemGif++ & 0xFF) << 0x08); + } else { + w = (WORD) (*MemGif++ & 0xFF); + w = ((WORD) (*MemGif++ & 0xFF)) | (w << 0x08); + } + + return w; +} + +BYTE +GetByte(BYTE *MemGif) +{ + return *MemGif; +} + +/* + * Read a GIF image BYTE Header. + * + * This function reads the Header, Logical Screen Descriptor, and + * Global Color Table (if any) from a GIF image file. The information + * is stored in a GIFHEAD structure. + * + * Returns: -1 if a FILE stream error occured during the read, + * otherwise 0 if no error occured. + */ +int +ReadGifHeader(GIFHEAD *GifHead, /* Pointer to GIF header structure */ + BYTE **MemGif2) /* GIF image file input FILE stream */ +{ + WORD i; /* Loop counter */ + WORD tableSize; /* Number of entires in the Global Color Table */ + + GifHead->TableSize = 0; + for (i = 0 ; i < 6 ; i++) { + GifHead->HeaderDump[i] = *(*MemGif2)++; + } + + if (strncmp((const char *)GifHead->HeaderDump , "GIF" , (size_t)3)) { + printf("The file does not appear to be a valid GIF file.\n"); + exit(EXIT_FAILURE); + } + + for (i = 0 ; i < 7 ; i++) { + GifHead->LSDDump[i] = *(*MemGif2)++; + } + + GifHead->PackedField = GifHead->LSDDump[4]; + + /* Check if a Global Color Table is present */ + if (GifHead->PackedField & 0x80) { + /* Read number of color table entries */ + tableSize = (WORD) (1L << ((GifHead->PackedField & 0x07) + 1)); + GifHead->TableSize = tableSize; + + /* Read the Global Color Table */ + + /* + * There are some changes made here apart from just reading in the + * global color table as would seem intuitively obvious. The colors + * are stored in the bottom part of the palette as opposed to the top + */ + + for (i = 0; i < tableSize; i++) { + GifHead->HDFPalette[i][0] = *(*MemGif2)++; + GifHead->HDFPalette[i][1] = *(*MemGif2)++; + GifHead->HDFPalette[i][2] = *(*MemGif2)++; + } + } + + /* Check for a FILE stream error */ +#if 0 + if (ferror(FpGif)) + return -1; +#endif /* 0 */ + + return 0; /* No FILE stream error occured */ +} + + +/* +** Read a GIF Local Image Descriptor. +** +** This function reads the Local Image Descriptor, and Local Color +** Table (if any) from a GIF image file. The information is stored +** in a GIFIMAGEDESC structure. +** +** Note that the ImageSeparator field value in the GIFIMAGEDESC +** structure is assigned by the function calling ReadGifImageDesc(). +** +** Returns: -1 if a FILE stream error occured during the read, +** otherwise 0 if no error occured. +*/ +int +ReadGifImageDesc( + GIFIMAGEDESC *GifImageDesc, /* Pointer to GIF image descriptor structure */ + BYTE **MemGif2 /* GIF image file input FILE stream */ + ) +{ + WORD i; /* Loop counter */ + WORD tableSize; /* Number of entries in the Local Color Table */ + /* BYTE Interlace; */ /* PackedField & 0x20 gives information on interlacing */ + BYTE *TempPtr; + int ch , ch1; + + GifImageDesc->TableSize = 0; + for (i = 0 ; i < 9 ; i++) { + GifImageDesc->GIDDump[i] = *(*MemGif2)++; + } + + /* + ** Get the relevant fields. I need ImageWidth and Height actively hence I have + ** taken information from those fields. I intend to keep the GifImageDesc data + ** structure as it is so that anyone needing the rest of the fields can do so + ** quickly. + */ + + if (EndianOrder == 1) /* LittleEndian */ + { + GifImageDesc->ImageWidth = (WORD) (GifImageDesc->GIDDump[4] & 0xFF); + GifImageDesc->ImageWidth |= (WORD) ((GifImageDesc->GIDDump[5] & 0xFF) << 0x08); + + GifImageDesc->ImageHeight = (WORD) (GifImageDesc->GIDDump[6] & 0xFF); + GifImageDesc->ImageHeight |= (WORD) ((GifImageDesc->GIDDump[7] & 0xFF) << 0x08); + + } + else + { + GifImageDesc->ImageWidth = (WORD) (GifImageDesc->GIDDump[4] & 0xFF); + GifImageDesc->ImageWidth = ((WORD) (GifImageDesc->GIDDump[5] & 0xFF)) | (GifImageDesc->ImageWidth << 0x08); + + GifImageDesc->ImageHeight = (WORD) (GifImageDesc->GIDDump[6] & 0xFF); + GifImageDesc->ImageHeight = ((WORD) (GifImageDesc->GIDDump[7] & 0xFF)) | (GifImageDesc->ImageWidth << 0x08); + + + } + + GifImageDesc->PackedField = GifImageDesc->GIDDump[8]; + + /* Interlace = GifImageDesc->PackedField & 0x20; */ + + /* Check if a Local Color Table is present */ + if (GifImageDesc->PackedField & 0x80) + { + /* Read number of color table entries */ + tableSize = (WORD) (1L << ((GifImageDesc->PackedField & 0x07) + 1)); + GifImageDesc->TableSize = tableSize; + /* Read the Local Color Table */ + for (i = 0; i < tableSize; i++) + { + GifImageDesc->HDFPalette[i][0] = *(*MemGif2)++; + GifImageDesc->HDFPalette[i][1] = *(*MemGif2)++; + GifImageDesc->HDFPalette[i][2] = *(*MemGif2)++; + } + } + + /* + ** Get LZW minimum Code Size + */ + GifImageDesc->CodeSize = (WORD)*(*MemGif2)++; + + /*GifImageDesc->GIFImage = ReadDataSubBlocks(FpGif);*/ + if (!(GifImageDesc->GIFImage = (BYTE *)malloc((GifImageDesc->ImageWidth) * (GifImageDesc->ImageHeight)))) { + printf("Out of memory"); + exit(EXIT_FAILURE); + } + + + TempPtr = GifImageDesc->GIFImage; + do + { + ch = ch1 = (int)*(*MemGif2)++; + while (ch--) *TempPtr++ = *(*MemGif2)++; + } + while (ch1); + + + return(0); /* No FILE stream error occured */ +} + + +/* +** Read a GIF Graphic Control Extension block. +** +** Note that the Introducer and Label field values in the GIFGRAPHICCONTROL +** structure are assigned by the function calling ReadGifGraphicControl(). +** +** Returns: -1 if a FILE stream error occured during the read, +** otherwise 0 if no error occured. +*/ +int +ReadGifGraphicControl( + GIFGRAPHICCONTROL *GifGraphicControl, /* Pointer to GC Extension structure */ + BYTE **MemGif2 /* GIF image file input FILE stream */ + ) +{ + int i; + + for (i = 0 ; i < 5 ; i++) { + GifGraphicControl->GCEDump[i] = *(*MemGif2)++; + } + + return(0); /* No FILE stream error occured */ +} + + +/* +** Read a GIF Plain Text Extension block. +** +** Note that the Introducer and Label field values in the GIFLPLAINTEXT +** structure are assigned by the function calling ReadGifPlainText(). +** +** Returns: -1 if a FILE stream error occured during the read, +** otherwise 0 if no error occured. +*/ +int +ReadGifPlainText( + GIFPLAINTEXT *GifPlainText, /* Pointer to Plain Text Extension structure */ + BYTE **MemGif2 /* GIF image file input FILE stream */ + ) +{ + int i; + + for (i = 0 ; i < 13 ; i++) { + GifPlainText->PTEDump[i] = *(*MemGif2)++; + } + + /* Read in the Plain Text data sub-blocks */ + if (!(GifPlainText->PlainTextData = ReadDataSubBlocks(MemGif2 , &(GifPlainText->DataSize)))) + return(1); + + /* + GifPlainText->Terminator = 0; + */ + + /* Check for a FILE stream error */ + /* + if (ferror(FpGif)) + return(-1); + */ + + return(0); /* No FILE stream error occured */ +} + + +/* +** Read a GIF Application Extension block. +** +** Note that the Introducer and Label field values in the GIFAPPLICATION +** structure are assigned by the function calling ReadGifApplication(). +** +** Returns: -1 if a FILE stream error occured during the read, +** otherwise 0 if no error occured. +*/ +int +ReadGifApplication( + GIFAPPLICATION *GifApplication, /* Pointer to Application Extension structure */ + BYTE **MemGif2 /* GIF image file input FILE stream */ + ) +{ + int i; + + for (i = 0 ; i < 12 ; i++) { + GifApplication->AEDump[i] = *(*MemGif2)++; + } + + /* Read in the Plain Text data sub-blocks */ + if (!(GifApplication->ApplicationData = ReadDataSubBlocks(MemGif2 , &(GifApplication->DataSize)))) + return(1); + /* + GifApplication->Terminator = 0; + */ + + /* Check for a FILE stream error */ + /* + if (ferror(FpGif)) + return(-1); + */ + + return(0); /* No FILE stream error occured */ +} + + +/* +** Read a GIF Comment Extension block. +** +** Note that the Introducer and Label field values in the GIFCOMMENT +** structure are assigned by the function calling ReadGifComment(). +** +** Returns: -1 if a FILE stream error occured during the read, +** otherwise 0 if no error occured. +*/ +int +ReadGifComment( + GIFCOMMENT *GifComment, /* Pointer to GIF Comment Extension structure */ + BYTE **MemGif2 /* GIF image file input FILE stream */ + ) +{ + + /* Read in the Plain Text data sub-blocks */ + if (!(GifComment->CommentData = ReadDataSubBlocks(MemGif2 , &(GifComment->DataSize)))) + return(1); + + GifComment->Terminator = 0; + + return(0); /* No FILE stream error occured */ +} + + +/* +** Read one or more GIF data sub-blocks and write the information +** to a buffer. +** +** A GIF "sub-block" is a single count byte followed by 1 to 255 +** additional data bytes. +** +** Returns: A NULL pointer if a memory allocation error occured, +** otherwise a valid pointer if no error occured. +*/ +static BYTE * +ReadDataSubBlocks(BYTE **MemGif2, /* GIF image file input FILE stream */ + WORD *DSize) +{ + BYTE *ptr1; /* Pointer used to "walk the heap" */ + BYTE *ptr2; /* Pointer used to mark the top of the heap */ + BYTE dataSize; /* Size of the current data sub-block being read */ + WORD bufSize; /* Total size of the Plain Text data buffer */ + int tempcount = 0; + + bufSize = 0; /* The output buffer is empty */ + + dataSize = *(*MemGif2)++; /* Get the size of the first sub-block */ + + /* Allocate initial data buffer */ + if (!(ptr1 = ptr2 = (BYTE *) malloc((size_t)dataSize + 1))) { + printf("Out of memory. Allocation of memory for data sub-blocks for\neither Comment, Plain Text or Application Extensions failed"); + return((BYTE *) NULL); + } + for (;;) + { + tempcount++; + bufSize += (dataSize); /* Running total of the buffer size */ + *DSize = bufSize; + +#ifdef COMMENTED_OUT + *ptr1++ = dataSize; /* Write the data count */ +#endif /* COMMENTED_OUT */ + while (dataSize--) /* Read/write the Plain Text data */ + *ptr1++ = *(*MemGif2)++; + + /* Check if there is another data sub-block */ + if ((dataSize = *(*MemGif2)++) == 0) + break; /* Block Terminator encountered */ + + /* Increase the buffer size to accomodate the next sub-block */ + if (!(ptr1 = ptr2 = (BYTE *) realloc(ptr2, bufSize + dataSize + 1))) + return((BYTE *) NULL); + + + ptr1 += bufSize; /* Move pointer to the end of the data */ + + + } + + *ptr1++ = '\0'; + + return(ptr2); /* Return a pointer to the sub-block data */ +} + + + + + diff --git a/hl/tools/gif2h5/h52gifgentst.c b/hl/tools/gif2h5/h52gifgentst.c new file mode 100644 index 0000000..655563c --- /dev/null +++ b/hl/tools/gif2h5/h52gifgentst.c @@ -0,0 +1,108 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include <assert.h> +#include <stdio.h> +#include <stdlib.h> +#include "hdf5.h" +#include "H5IMpublic.h" + +/*------------------------------------------------------------------------- + * Program: h52gifgentst + * + * Purpose: generate files for h52gif testing + * + * Programmer: Pedro Vicente, pvn@hdfgroup.org + * + * Date: March 15, 2007 + * + *------------------------------------------------------------------------- + */ + +#define FILENAME "h52giftst.h5" +#define WIDTH 400 +#define HEIGHT 200 +#define PAL_ENTRIES 256 +#define IMAGE1_NAME "image" +#define PAL_NAME "palette" + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: main program + * + *------------------------------------------------------------------------- + */ + +int main(void) +{ + hid_t fid; + int i, j, n, space; + unsigned char *buf; + unsigned char pal[ PAL_ENTRIES * 3 ]; /* palette array */ + hsize_t pal_dims[2] = {PAL_ENTRIES,3}; /* palette dimensions */ + hsize_t width = WIDTH; + hsize_t height = HEIGHT; + + /* Allocate buffer */ + if(NULL == (buf = (unsigned char *)malloc(WIDTH * HEIGHT))) + return EXIT_FAILURE; + + /* create a file */ + if ((fid = H5Fcreate(FILENAME, H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT))<0) + return EXIT_FAILURE; + + /* create an image */ + space = WIDTH*HEIGHT / PAL_ENTRIES; + for (i=0, j=0, n=0; i < WIDTH*HEIGHT; i++, j++ ) + { + buf[i] = (unsigned char)n; + if ( j > space ) + { + n++; + j=0; + } + + } + + /* make the image */ + if (H5IMmake_image_8bit( fid, IMAGE1_NAME, width, height, buf )<0) + return EXIT_FAILURE; + + /*------------------------------------------------------------------------- + * define a palette, blue to red tones + *------------------------------------------------------------------------- + */ + for ( i=0, n=0; i<PAL_ENTRIES*3; i+=3, n++) + { + pal[i] = (unsigned char)n; /* red */ + pal[i+1] = (unsigned char)0; /* green */ + pal[i+2] = (unsigned char)(255-n); /* blue */ + } + + /* make a palette */ + if (H5IMmake_palette( fid, PAL_NAME, pal_dims, pal )<0) + return EXIT_FAILURE; + + /* attach the palette to the image */ + if (H5IMlink_palette( fid, IMAGE1_NAME, PAL_NAME )<0) + return EXIT_FAILURE; + + if(H5Fclose(fid)<0) + return EXIT_FAILURE; + + free(buf); + + return EXIT_SUCCESS; +} + diff --git a/hl/tools/gif2h5/h52giftest.sh.in b/hl/tools/gif2h5/h52giftest.sh.in new file mode 100644 index 0000000..5643e30 --- /dev/null +++ b/hl/tools/gif2h5/h52giftest.sh.in @@ -0,0 +1,96 @@ +#!/bin/sh +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +# +# HDF Utilities Test script + + +TESTFILE1="$srcdir/testfiles/h52giftst.h5" +TESTFILE2="$srcdir/testfiles/image1.gif" +TESTFILE3="$srcdir/testfiles/ex_image2.h5" + +# initialize errors variable +errors=0 + +TESTING() { + SPACES=" " + echo "Testing $* $SPACES" | cut -c1-70 | tr -d '\012' +} + + + +# Verify the test runs with success (return code is 0) +TOOLTEST() +{ + # for now, discard any error messages generated. + $RUNSERIAL $* > /dev/null 2>&1 + + RET=$? + if [ $RET = 0 ] ; then + echo " PASSED" + else + echo "*FAILED*" + errors="` expr $errors + 1 `"; + fi + +} + +# Verify the test runs with failure (return code is not 0) +# Use for testing if tool can handle error conditions like +# illegal input, bad arguments, exeeding limits, ... +TOOLTESTFAIL() +{ + # for now, discard any error messages generated. + $RUNSERIAL $* > /dev/null 2>&1 + + RET=$? + if [ $RET != 0 ] ; then + echo " PASSED" + else + echo "*FAILED*" + errors="` expr $errors + 1 `"; + fi +} + + +# Positive tests for gif2h5 +echo "**validate the gif2h5 tool processes input correctly..." +TESTING "./gif2h5 image1.gif image1.h5" +TOOLTEST ./gif2h5 $TESTFILE2 image1.h5 +echo "" + +# Positive tests for h52gif +echo "**validate the h52gif tool processes input correctly..." +TESTING "./h52gif h52giftst.h5 image1.gif -i image" +TOOLTEST ./h52gif $TESTFILE1 image1.gif -i image +echo "" + +# Negative tests. +echo "**verify that the h52gif tool handles error conditions correctly..." +# nonexisting dataset name +TESTING "./h52gif h52giftst.h5 image.gif -i nosuch_image" +TOOLTESTFAIL "./h52gif $TESTFILE1 image.gif -i nosuch_image" +# this test should have failed but it did not. Comment it out for now. +#TESTING "./h52gif h52giftst.h5 image.gif -i palette" +#TOOLTESTFAIL "./h52gif $TESTFILE1 image.gif -i palette" +TESTING "./h52gif h52giftst.h5 image24.gif -i image24bitpixel" +TOOLTESTFAIL "./h52gif $TESTFILE3 image24.gif -i image24bitpixel" +echo "" + +# all done. summarize results. +if test $errors -eq 0 ; then + echo "All gif2h5 and h52gif tests passed." + exit 0 +else + echo "Some gif2h5 or h52gif tests failed with $errors errors." + exit 1 +fi diff --git a/hl/tools/gif2h5/hdf2gif.c b/hl/tools/gif2h5/hdf2gif.c new file mode 100644 index 0000000..ae63e92 --- /dev/null +++ b/hl/tools/gif2h5/hdf2gif.c @@ -0,0 +1,352 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include <stdio.h> +#include <assert.h> +#include "gif.h" +#include "H5IMpublic.h" +#include "h5tools.h" +#include "h5tools_utils.h" + +#define IMAGE_WIDTH_MAX 65535 /* unsigned 16bits integer */ +#define IMAGE_HEIGHT_MAX 65535 /* unsigned 16bits integer */ + + +int EndianOrder; + +static void +putword(int w, FILE *fp) +{ + /* writes a 16-bit integer in GIF order (LSB first) */ + fputc(w &0xff, fp); + fputc((w>>8)&0xff,fp); +} + +static void +usage(void) +{ + printf("Usage: h52gif <h5_file> <gif_file> -i <h5_image>\n"); + fprintf(stdout, " h52gif -V \n"); + fprintf(stdout, " Print HDF5 library version and exit\n"); + printf("h52gif expects *at least* one h5_image.\n"); + +} + +FILE *fpGif = NULL; +int main(int argc , char **argv) +{ + BYTE *Image; + void *edata; + H5E_auto2_t func; + + /* compression structs */ + CHAR *HDFName = NULL; + CHAR *GIFName = NULL; + + BYTE* b; + + BYTE GlobalPalette[256][3]; + BYTE Red[256]; + BYTE Green[256]; + BYTE Blue[256]; + + int RWidth, RHeight; + int ColorMapSize, InitCodeSize, Background, BitsPerPixel; + int j,nc; + int i; + int numcols = 0; + + BYTE pc2nc[256] , r1[256] , g1[256] , b1[256]; + + int arg_index = 2; + int bool_is_image = 0; /* 0 = false , 1 = true */ + char *image_name = NULL; + int idx; + + /* Disable error reporting */ + H5Eget_auto2(H5E_DEFAULT, &func, &edata); + H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + + /* Initialize h5tools lib */ + h5tools_init(); + + if ( argv[1] && (strcmp("-V",argv[1])==0) ) + { + print_version("gif2h5"); + exit(EXIT_SUCCESS); + + } + + + if (argc < 4) + { + /* they didn't supply at least one image -- bail */ + usage(); + return EXIT_FAILURE; + } + + HDFName = argv[1]; + GIFName = argv[2]; + + /* get the options */ + while (arg_index++ < argc - 1) + { + if (!strcmp(argv[arg_index] , "-i")) { + bool_is_image = 1; + continue; + } + + if (bool_is_image) + { + /* allocate space to store the image name */ + size_t len = strlen(argv[arg_index]); + image_name = (CHAR*) malloc( len + 1); + strcpy(image_name , argv[arg_index]); + + bool_is_image = 0; + continue; + } + + /* oops. This was not meant to happen */ + usage(); + + goto out; + } + + /* Do Endian Order testing and set Endian Order */ + idx = 0x0001; + b = (BYTE *) &idx; + EndianOrder = (b[0] ? 1:0); + + if (!(fpGif = fopen(GIFName , "wb"))) + { + printf("Error opening gif file for output. Aborting.\n"); + goto out; + } + + Background = 0; + { + hsize_t width, height, planes; + hid_t fid; + char interlace[20]; + hssize_t npals; + hsize_t pal_dims[2]; + unsigned char *pal; + + if ((fid = H5Fopen(HDFName , H5F_ACC_RDONLY , H5P_DEFAULT)) < 0) + { + fprintf(stderr , "Unable to open HDF file for input. Aborting.\n"); + goto out; + } + + /* read image */ + if ( H5IMget_image_info( fid, image_name, &width, &height, &planes, interlace, &npals ) < 0 ) + goto out; + + if (width > IMAGE_WIDTH_MAX || height > IMAGE_HEIGHT_MAX){ + fprintf(stderr, "HDF5 image is too large. Limit is %d by %d.\n", IMAGE_WIDTH_MAX, IMAGE_HEIGHT_MAX); + goto out; + } + + /* tool can handle single plane images only. */ + if (planes > 1){ + fprintf(stderr, "Cannot handle multiple planes image\n"); + goto out; + } + + Image = (BYTE*) malloc( (size_t) width * (size_t) height ); + + if ( H5IMread_image( fid, image_name, Image ) < 0 ) + goto out; + + if (npals) + { + if ( H5IMget_palette_info( fid, image_name, 0, pal_dims ) < 0 ) + goto out; + + pal = (BYTE*) malloc( (size_t) pal_dims[0] * (size_t) pal_dims[1] ); + + if ( H5IMget_palette( fid, image_name, 0, pal ) < 0 ) + goto out; + + numcols = (int) pal_dims[0]; + + for (i = 0, j = 0 ; i < numcols ; j+=3, i++) + { + GlobalPalette[i][0] = pal[j]; + GlobalPalette[i][1] = pal[j+1]; + GlobalPalette[i][2] = pal[j+2]; + } + + free(pal); + } + + H5Fclose(fid); + + RWidth = (int)width; + RHeight = (int)height; + + + /* + * If the first image does not have a palette, I make my own global + * color table Obviously this is not the best thing to do, better + * steps would be: + * + * 1. Check for either a global palette or a global attribute called + * palette + * 2. Check for palettes in any of the other images. + */ + if (!npals) + { + numcols = 256; + for (i = 0 ; i < numcols ; i++) + { + Red[i] = (BYTE)(255 - i); + Green[i] = (BYTE)(255 - i); + Blue[i] = (BYTE)(255 - i); + } + } + else + { + for (i = 0 ; i < numcols ; i++) + { + Red[i] = GlobalPalette[i][0]; + Green[i] = GlobalPalette[i][1]; + Blue[i] = GlobalPalette[i][2]; + } + } + + for (i = 0; i < numcols; i++) + { + pc2nc[i] = r1[i] = g1[i] = b1[i] = 0; + } + + /* compute number of unique colors */ + nc = 0; + + for (i = 0; i < numcols; i++) + { + /* see if color #i is already used */ + for (j = 0; j < i; j++) + { + if (Red[i] == Red[j] && Green[i] == Green[j] && Blue[i] == Blue[j]) + break; + } + + if (j==i) + { + /* wasn't found */ + pc2nc[i] = (BYTE)nc; + r1[nc] = Red[i]; + g1[nc] = Green[i]; + b1[nc] = Blue[i]; + nc++; + } + else + { + pc2nc[i] = pc2nc[j]; + } + } + + /* figure out 'BitsPerPixel' */ + for (i = 1; i < 8; i++) + { + if ((1<<i) >= nc) + break; + } + + BitsPerPixel = i; + ColorMapSize = 1 << BitsPerPixel; + + if (BitsPerPixel <= 1) + InitCodeSize = 2; + else + InitCodeSize = BitsPerPixel; + + if (!fpGif) + { + fprintf(stderr, "WriteGIF: file not open for writing\n" ); + goto out; + } + + + fwrite("GIF87a", sizeof( char ), 6, fpGif); /* the GIF magic number */ + + putword(RWidth, fpGif); /* screen descriptor */ + putword(RHeight, fpGif); + + i = 0x00; /* No, there is no color map */ + i |= (8-1)<<4; /* OR in the color resolution (hardwired 8) */ + i |= (BitsPerPixel - 1); /* OR in the # of bits per pixel */ + fputc(i,fpGif); + + fputc(Background,fpGif); /* background color */ + fputc(0, fpGif); /* future expansion byte */ + + + /* + * Put Image Descriptor + * Hardwiring Left Offset and Top Offset to 0x00 + */ + fputc(0x2c , fpGif); + putword(0x00 , fpGif); + putword(0x00 , fpGif); + putword(RWidth , fpGif); + putword(RHeight , fpGif); + + /* since we always have a local color palette ... */ + fputc((0x80 | (BitsPerPixel - 1)) , fpGif); + + for (i = 0; i < ColorMapSize; i++) + { + /* write out Global colormap */ + fputc(r1[i], fpGif); + fputc(g1[i], fpGif); + fputc(b1[i], fpGif); + } + + fputc(InitCodeSize , fpGif); + + i = hdfWriteGIF(fpGif , Image , 0 , RHeight , RWidth , r1, g1 , b1 , pc2nc , 256 , 8 , BitsPerPixel); + fputc(0x00, fpGif); + free(Image); + } + + if (fputc(';',fpGif) == EOF) + { + /* Write GIF file terminator */ + fprintf(stderr , "Error!"); + goto out; + } + + if (fpGif != NULL) + fclose(fpGif); + if (image_name != NULL) + free(image_name); + + H5Eset_auto2(H5E_DEFAULT, func, edata); + + return EXIT_SUCCESS; + + +out: + + if (fpGif != NULL) + fclose(fpGif); + if (image_name != NULL) + free(image_name); + + H5Eset_auto2(H5E_DEFAULT, func, edata); + + return EXIT_FAILURE; +} diff --git a/hl/tools/gif2h5/hdfgifwr.c b/hl/tools/gif2h5/hdfgifwr.c new file mode 100644 index 0000000..6f5ab58 --- /dev/null +++ b/hl/tools/gif2h5/hdfgifwr.c @@ -0,0 +1,455 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* + * hdfgifwr.c - handles writing of GIF files. + * + * Contains: + * hdfWriteGIF(fp, pic, ptype, w, h, rmap, gmap, bmap, numcols, colorstyle, + * comment) + * + * Note: slightly brain-damaged, in that it'll only write non-interlaced + * GIF files (in the interests of speed, or something) + */ + +/***************************************************************** + * Portions of this code Copyright (C) 1989 by Michael Mauldin. + * Permission is granted to use this file in whole or in + * part for any purpose, educational, recreational or commercial, + * provided that this copyright notice is retained unchanged. + * This software is available to all free of charge by anonymous + * FTP and in the UUNET archives. + * + * + * Authors: Michael Mauldin (mlm@cs.cmu.edu) + * David Rowley (mgardi@watdcsu.waterloo.edu) + * + * Based on: compress.c - File compression ala IEEE Computer, June 1984. + * + * Spencer W. Thomas (decvax!harpo!utah-cs!utah-gr!thomas) + * Jim McKie (decvax!mcvax!jim) + * Steve Davies (decvax!vax135!petsd!peora!srd) + * Ken Turkowski (decvax!decwrl!turtlevax!ken) + * James A. Woods (decvax!ihnp4!ames!jaw) + * Joe Orost (decvax!vax135!petsd!joe) + *****************************************************************/ + + +#include <stdio.h> +#include <stdlib.h> +#include <string.h> + +#include "gif.h" + +typedef BYTE byte; +typedef long int count_int; + +#ifdef __STDC__ +static void compress(int, FILE *, byte *, int); +static void output(int); +static void cl_block(void); +static void cl_hash(count_int); +static void char_init(void); +static void char_out(int); +static void flush_char(void); +#else +static void compress(), output(), cl_block(), cl_hash(); +static void char_init(), char_out(), flush_char(); +#endif /* __STDC__ */ + +static byte pc2nc[256]; + +/*************************************************************/ +int hdfWriteGIF(FILE *fp, byte *pic, int ptype, int w, int h, byte *rmap, + byte *gmap, byte *bmap, byte *pc2ncmap, int numcols, + int colorstyle, int BitsPerPixel) +{ + int InitCodeSize; + int i; + byte *pic8 = pic; + + /* Shut compiler up... */ + ptype=ptype; + rmap=rmap; + gmap=gmap; + bmap=bmap; + numcols=numcols; + colorstyle=colorstyle; + + for (i = 0; i < 256; i++) { + pc2nc[i] = pc2ncmap[i]; + } + + if (BitsPerPixel <= 1) + InitCodeSize = 2; + else + InitCodeSize = BitsPerPixel; + + if (!fp) { + fprintf(stderr, "WriteGIF: file not open for writing\n" ); + return (1); + } + + compress(InitCodeSize+1, fp, pic8, w*h); + + if (ferror(fp)) + return -1; + + return 0 ; +} + +/***********************************************************************/ +static unsigned long cur_accum = 0; +static int cur_bits = 0; + +#define MAXCODE(n_bits) ( (1 << (n_bits)) - 1) +#define XV_BITS 12 /* BITS was already defined on some systems */ +#define HSIZE 5003 /* 80% occupancy */ + +typedef unsigned char char_type; + +static int n_bits; /* number of bits/code */ +static int maxbits = XV_BITS; /* user settable max # bits/code */ +static int maxcode; /* maximum code, given n_bits */ +static int maxmaxcode = 1 << XV_BITS; /* NEVER generate this */ + +static count_int htab [HSIZE]; +static unsigned short codetab [HSIZE]; + +#define HashTabOf(i) htab[i] +#define CodeTabOf(i) codetab[i] + +static int hsize = HSIZE; /* for dynamic table sizing */ + +/* + * To save much memory, we overlay the table used by compress() with those + * used by decompress(). The tab_prefix table is the same size and type as + * the codetab. The tab_suffix table needs 2**BITS characters. We get this + * from the beginning of htab. The output stack uses the rest of htab, and + * contains characters. There is plenty of room for any possible stack (stack + * used to be 8000 characters). + */ + +static int free_ent = 0; /* first unused entry */ + +/* + * block compression parameters -- after all codes are used up, + * and compression rate changes, start over. + */ +static int clear_flg = 0; + +static long int in_count = 1; /* length of input */ +static long int out_count = 0; /* # of codes output (for debugging) */ + +/* + * compress stdin to stdout + * + * Algorithm: use open addressing double hashing (no chaining) on the prefix + * code / next character combination. We do a variant of Knuth's algorithm D + * (vol. 3, sec. 6.4) along with G. Knott's relatively-prime secondary probe. + * Here, the modular division first probe is gives way to a faster + * exclusive-or manipulation. Also do block compression with an adaptive + * reset, whereby the code table is cleared when the compression ratio + * decreases, but after the table fills. The variable-length output codes are + * re-sized at this point, and a special CLEAR code is generated for the + * decompressor. Late addition: construct the table according to file size + * for noticeable speed improvement on small files. Please direct questions + * about this implementation to ames!jaw. + */ + +static int g_init_bits; +static FILE *g_outfile; + +static int ClearCode; +static int EOFCode; + +/********************************************************/ +static void compress(int init_bits, FILE *outfile, byte *data, int len) +{ + register long fcode; + register int i = 0; + register int c; + register int ent; + register int disp; + register int hsize_reg; + register int hshift; + + /* + * Set up the globals: g_init_bits - initial number of bits g_outfile - + * pointer to output file + */ + g_init_bits = init_bits; + g_outfile = outfile; + + /* initialize 'compress' globals */ + maxbits = XV_BITS; + maxmaxcode = 1<<XV_BITS; + memset(htab, 0, sizeof(htab)); + memset(codetab, 0, sizeof(codetab)); + hsize = HSIZE; + free_ent = 0; + clear_flg = 0; + in_count = 1; + out_count = 0; + cur_accum = 0; + cur_bits = 0; + + /* Set up the necessary values */ + out_count = 0; + clear_flg = 0; + in_count = 1; + maxcode = MAXCODE(n_bits = g_init_bits); + + ClearCode = (1 << (init_bits - 1)); + EOFCode = ClearCode + 1; + free_ent = ClearCode + 2; + + char_init(); + ent = pc2nc[*data++]; + len--; + + hshift = 0; + for (fcode = (long)hsize; fcode < 65536L; fcode *= 2L ) + hshift++; + + hshift = 8 - hshift; /* set hash code range bound */ + + hsize_reg = hsize; + cl_hash( (count_int) hsize_reg); /* clear hash table */ + + output(ClearCode); + + while (len) { + c = pc2nc[*data++]; + len--; + in_count++; + + fcode = (long)(((long) c << maxbits) + ent); + i = (((int) c << hshift) ^ ent); /* xor hashing */ + + if ( HashTabOf (i) == fcode ) { + ent = CodeTabOf (i); + continue; + } else if ( (long)HashTabOf (i) < 0) { + /* empty slot */ + goto nomatch; + } + + disp = hsize_reg - i; /* secondary hash (after G. Knott) */ + + if ( i == 0 ) + disp = 1; + +probe: + if ((i -= disp) < 0) + i += hsize_reg; + + if (HashTabOf (i) == fcode) { + ent = CodeTabOf (i); + continue; + } + + if ((long)HashTabOf (i) >= 0) + goto probe; + +nomatch: + output(ent); + out_count++; + ent = c; + + if (free_ent < maxmaxcode) { + CodeTabOf (i) = (unsigned short)free_ent++; /* code -> hashtable */ + HashTabOf (i) = fcode; + } else { + cl_block(); + } + } + + /* Put out the final code */ + output(ent); + out_count++; + output(EOFCode); +} + + +/***************************************************************** + * TAG( output ) + * + * Output the given code. + * Inputs: + * code: A n_bits-bit integer. If == -1, then EOF. This assumes + * that n_bits =< (long)wordsize - 1. + * Outputs: + * Outputs code to the file. + * Assumptions: + * Chars are 8 bits long. + * Algorithm: + * Maintain a BITS character long buffer (so that 8 codes will + * fit in it exactly). Use the VAX insv instruction to insert each + * code in turn. When the buffer fills up empty it and start over. + */ + +static +unsigned long masks[] = { 0x0000, 0x0001, 0x0003, 0x0007, 0x000F, + 0x001F, 0x003F, 0x007F, 0x00FF, + 0x01FF, 0x03FF, 0x07FF, 0x0FFF, + 0x1FFF, 0x3FFF, 0x7FFF, 0xFFFF }; + +static void +output(int code) +{ + cur_accum &= masks[cur_bits]; + + if (cur_bits > 0) + cur_accum |= (unsigned long)((long)code << cur_bits); + else + cur_accum = (unsigned long)code; + + cur_bits += n_bits; + + while( cur_bits >= 8 ) { + char_out( (int)((unsigned int) cur_accum & 0xff) ); + cur_accum >>= 8; + cur_bits -= 8; + } + + /* + * If the next entry is going to be too big for the code size, then + * increase it, if possible. + */ + if (free_ent > maxcode || clear_flg) { + if (clear_flg) { + maxcode = MAXCODE (n_bits = g_init_bits); + clear_flg = 0; + } else { + n_bits++; + + if ( n_bits == maxbits ) + maxcode = maxmaxcode; + else + maxcode = MAXCODE(n_bits); + } + } + + if (code == EOFCode) { + /* At EOF, write the rest of the buffer */ + while( cur_bits > 0 ) { + char_out( (int)((unsigned int)cur_accum & 0xff) ); + cur_accum >>= 8; + cur_bits -= 8; + } + + flush_char(); + fflush( g_outfile ); + +#ifdef FOO + if(ferror( g_outfile)) + FatalError("unable to write GIF file"); +#endif + } +} + +/********************************/ +static void +cl_block(void) /* table clear for block compress */ +{ + /* Clear out the hash table */ + cl_hash((count_int) hsize); + free_ent = ClearCode + 2; + clear_flg = 1; + output(ClearCode); +} + +/********************************/ +static void +cl_hash(count_int hashsize) /* reset code table */ +{ + count_int *htab_p = htab+hashsize; + long i, m1 = -1; + + i = hashsize - 16; + + do { /* might use Sys V memset(3) here */ + *(htab_p-16) = m1; + *(htab_p-15) = m1; + *(htab_p-14) = m1; + *(htab_p-13) = m1; + *(htab_p-12) = m1; + *(htab_p-11) = m1; + *(htab_p-10) = m1; + *(htab_p-9) = m1; + *(htab_p-8) = m1; + *(htab_p-7) = m1; + *(htab_p-6) = m1; + *(htab_p-5) = m1; + *(htab_p-4) = m1; + *(htab_p-3) = m1; + *(htab_p-2) = m1; + *(htab_p-1) = m1; + htab_p -= 16; + } while ((i -= 16) >= 0); + + for ( i += 16; i > 0; i-- ) + *--htab_p = m1; +} + +/****************************************************************************** + * + * GIF Specific routines + * + ******************************************************************************/ + +/* + * Number of characters so far in this 'packet' + */ +static int a_count; + +/* + * Set up the 'byte output' routine + */ +static void +char_init(void) +{ + a_count = 0; +} + +/* + * Define the storage for the packet accumulator + */ +static char accum[ 256 ]; + +/* + * Add a character to the end of the current packet, and if it is 254 + * characters, flush the packet to disk. + */ +static void +char_out(int c) +{ + accum[ a_count++ ] = (char)c; + + if (a_count >= 254) + flush_char(); +} + +/* + * Flush the packet to disk, and reset the accumulator + */ +static void +flush_char(void) +{ + if (a_count > 0) { + fputc( a_count, g_outfile ); + fwrite( accum, (size_t)1, (size_t)a_count, g_outfile); + a_count = 0; + } +} diff --git a/hl/tools/gif2h5/testfiles/README b/hl/tools/gif2h5/testfiles/README new file mode 100644 index 0000000..a428d47 --- /dev/null +++ b/hl/tools/gif2h5/testfiles/README @@ -0,0 +1,6 @@ +ex_image2.h5 + Generated by hl/examples/ex_image2.c +5giftst.h5: + Generated by ../h52gifgentst.c +image1.gif: + To be determined. diff --git a/hl/tools/gif2h5/testfiles/ex_image2.h5 b/hl/tools/gif2h5/testfiles/ex_image2.h5 Binary files differnew file mode 100644 index 0000000..a36df1b --- /dev/null +++ b/hl/tools/gif2h5/testfiles/ex_image2.h5 diff --git a/hl/tools/gif2h5/testfiles/h52giftst.h5 b/hl/tools/gif2h5/testfiles/h52giftst.h5 Binary files differnew file mode 100644 index 0000000..a827b3b --- /dev/null +++ b/hl/tools/gif2h5/testfiles/h52giftst.h5 diff --git a/hl/tools/gif2h5/testfiles/image1.gif b/hl/tools/gif2h5/testfiles/image1.gif Binary files differnew file mode 100644 index 0000000..b90b23a --- /dev/null +++ b/hl/tools/gif2h5/testfiles/image1.gif diff --git a/hl/tools/gif2h5/writehdf.c b/hl/tools/gif2h5/writehdf.c new file mode 100644 index 0000000..b656c36 --- /dev/null +++ b/hl/tools/gif2h5/writehdf.c @@ -0,0 +1,124 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ +#include <string.h> +#include <stdlib.h> +#include <string.h> + +#include "gif.h" +#include "H5IMpublic.h" + +#define PAL_NAME "global" + +/*------------------------------------------------------------------------- + * Function: WriteHDF + * + * Purpose: Write the GIF image with the HDF5 Image API + * + * Programmer: Unknown + * + * Modifications: pvn + * Use the HDF5 IMAGE API to write the HDF5 image and pallete + * + * Date: January, 31, 2006 + * + *------------------------------------------------------------------------- + */ + +int +WriteHDF(GIFTOMEM GifMemoryStruct, char *HDFName) +{ + GIFHEAD gifHead; /* GIF Header structure */ + GIFIMAGEDESC *gifImageDesc; /* Logical Image Descriptor struct */ + int has_pal=0; + + long ImageCount; /* number of images */ +#ifdef UNUSED + long CommentCount, /* number of comments */ + ApplicationCount, /* number of application extensions */ + PlainTextCount; /* number of plain text extensions */ +#endif /* UNUSED */ + + char ImageName[256]; /* Image name for the Image */ + + /* H5 variables */ + hid_t file_id; /* H5 file id */ + + /* temp counter */ + int i; + + /* get the GIFMem stuff */ + gifHead = *(GifMemoryStruct.GifHeader); + + /* get some data from gifHead */ + ImageCount = gifHead.ImageCount; +#ifdef UNUSED + CommentCount = (WORD)gifHead.CommentCount; + ApplicationCount = (WORD)gifHead.ApplicationCount; + PlainTextCount = (WORD)gifHead.PlainTextCount; +#endif /* UNUSED */ + + if ((file_id = H5Fcreate(HDFName , H5F_ACC_TRUNC , H5P_DEFAULT , H5P_DEFAULT)) < 0) { + /* error occured opening the HDF File for write */ + fprintf(stderr , "HDF file could not be opened for writing\n"); + fprintf(stderr , "NOTE: GIF file must be present in the same directory as the binary on UNIX systems.\n"); + exit(1); + } + + /* first create the global palette if there is one */ + if (gifHead.PackedField & 0x80) { /* global palette exists */ + hsize_t dims[2]; /* specify the dimensions of the palette */ + + /* size of the palette is tablesize (rows) X 3 (columns) */ + dims[0] = gifHead.TableSize; + dims[1] = 3; + + /* make a palette */ + if (H5IMmake_palette(file_id,PAL_NAME,dims,(unsigned char *)gifHead.HDFPalette)<0) + return -1; + + has_pal=1; + } + + for(i = 0; i < ImageCount; i++) { + hsize_t dims[2]; /* dimensions for the dataset */ + /* get the gifImageDesc */ + gifImageDesc = GifMemoryStruct.GifImageDesc[i]; + + /* set the dimensions */ + dims[0] = gifImageDesc->ImageHeight; + dims[1] = gifImageDesc->ImageWidth; + + /* create the image name */ + sprintf(ImageName , "Image%d" , i); + + /* write image */ + if (H5IMmake_image_8bit(file_id,ImageName,dims[1],dims[0],(gifImageDesc->Image))<0) + return -1; + + /* attach the palette to the image dataset */ + if (has_pal) + { + if (H5IMlink_palette(file_id,ImageName,PAL_NAME)<0) + return -1; + } + } + + /* close the H5 file */ + if (H5Fclose(file_id) < 0) { + fprintf(stderr , "Could not close HDF5 file. Aborting...\n"); + return -1; + } + + return 0; +} + diff --git a/hl/tools/h5watch/CMakeLists.txt b/hl/tools/h5watch/CMakeLists.txt new file mode 100644 index 0000000..fde40e3 --- /dev/null +++ b/hl/tools/h5watch/CMakeLists.txt @@ -0,0 +1,65 @@ +cmake_minimum_required (VERSION 3.2.2) +PROJECT (HDF5_HL_TOOLS_H5WATCH) + +#----------------------------------------------------------------------------- +# Define Sources +#----------------------------------------------------------------------------- +set (H5WATCH_SOURCES + ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/h5watch +) + +#-- Add h5watch program +include_directories (${HDF5_TOOLS_DIR}/lib) +include_directories (${HDF5_HL_TOOLS_DIR}/src) +include_directories (${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}) + +add_executable (h5watch ${H5WATCH_SOURCES}) +TARGET_NAMING (h5watch STATIC) +TARGET_C_PROPERTIES (h5watch STATIC " " " ") +target_link_libraries (h5watch ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) +set_target_properties (h5watch PROPERTIES FOLDER tools/hl) + +if (BUILD_TESTING) + include_directories (${HDF5_TEST_SRC_DIR}) + include_directories(${HDF5_HL_SRC_DIR}/test) + #-- Add swmr_check_compat_vfd program + set (hl_swmr_check_compat_vfd_SOURCES + ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/swmr_check_compat_vfd.c + ) + add_executable (hl_swmr_check_compat_vfd ${hl_swmr_check_compat_vfd_SOURCES}) + TARGET_NAMING (hl_swmr_check_compat_vfd STATIC) + TARGET_C_PROPERTIES (hl_swmr_check_compat_vfd STATIC " " " ") + target_link_libraries (hl_swmr_check_compat_vfd ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + set_target_properties (hl_swmr_check_compat_vfd PROPERTIES FOLDER tools/hl) + + #-- Add extend_dset program + set (extend_dset_SOURCES + ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/extend_dset.c + ) + add_executable (extend_dset ${extend_dset_SOURCES}) + TARGET_NAMING (extend_dset STATIC) + TARGET_C_PROPERTIES (extend_dset STATIC " " " ") + target_link_libraries (extend_dset ${HDF5_HL_LIB_TARGET} ${HDF5_TEST_LIB_TARGET} ${HDF5_LIB_TARGET} ${HDF5_TOOLS_LIB_TARGET}) + set_target_properties (extend_dset PROPERTIES FOLDER tools/hl) + + add_executable (h5watchgentest ${HDF5_HL_TOOLS_H5WATCH_SOURCE_DIR}/h5watchgentest.c) + TARGET_NAMING (h5watchgentest STATIC) + TARGET_C_PROPERTIES (h5watchgentest STATIC " " " ") + target_link_libraries (h5watchgentest ${HDF5_HL_LIB_TARGET} ${HDF5_LIB_TARGET}) + set_target_properties (h5watchgentest PROPERTIES FOLDER generator/tools/hl) + + include (CMakeTests.cmake) +endif () + +#----------------------------------------------------------------------------- +# Add file(s) to CMake Install +#----------------------------------------------------------------------------- +if (HDF5_EXPORTED_TARGETS) + install ( + TARGETS + h5watch + EXPORT + ${HDF5_EXPORTED_TARGETS} + RUNTIME DESTINATION ${HDF5_INSTALL_BIN_DIR} COMPONENT hltoolsapplications + ) +endif () diff --git a/hl/tools/h5watch/CMakeTests.cmake b/hl/tools/h5watch/CMakeTests.cmake new file mode 100644 index 0000000..35e7829 --- /dev/null +++ b/hl/tools/h5watch/CMakeTests.cmake @@ -0,0 +1,188 @@ +# +# Copyright by The HDF Group. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +# + +############################################################################## +############################################################################## +### T E S T I N G ### +############################################################################## +############################################################################## + +set (H5WATCH_TEST_FILES + w-help1.ddl + w-err-cmpd1.ddl + w-err-cmpd2.ddl + w-err-cmpd3.ddl + w-err-cmpd4.ddl + w-err-cmpd5.ddl + w-err-dset1.ddl + w-err-dset2.ddl + w-err-dset-nomax.ddl + w-err-dset-none.ddl + w-err-file.ddl + w-err-poll.ddl + w-err-poll0.ddl + w-err-width.ddl + w-ext-cmpd.ddl + w-ext-cmpd-esc.ddl + w-ext-cmpd-esc-f1.ddl + w-ext-cmpd-esc-f3.ddl + w-ext-cmpd-esc-ff2.ddl + w-ext-cmpd-f1.ddl + w-ext-cmpd-f2.ddl + w-ext-cmpd-ff3.ddl + w-ext-cmpd-label.ddl + w-ext-cmpd-two.ddl + w-ext-cmpd-two-f1.ddl + w-ext-cmpd-two-f3.ddl + w-ext-cmpd-two-ff2.ddl + w-ext-early.ddl + w-ext-late.ddl + w-ext-one.ddl + w-ext-one-d.ddl + w-ext-one-simple.ddl + w-ext-two.ddl + w-ext-two-d.ddl + w-ext-two-width.ddl +) + +# make test dir +file (MAKE_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") +add_custom_target(h5watch-files ALL COMMENT "Copying files needed by h5watch tests") + +foreach (h5watch_file ${H5WATCH_TEST_FILES}) + set (dest "${PROJECT_BINARY_DIR}/testfiles/${h5watch_file}") + #message (STATUS " Copying ${h5watch_file}") + add_custom_command ( + TARGET h5watch-files + POST_BUILD + COMMAND ${CMAKE_COMMAND} + ARGS -E copy_if_different ${HDF5_HL_TOOLS_DIR}/testfiles/${h5watch_file} ${dest} + ) +endforeach () + +############################################################################## +############################################################################## +### T H E T E S T S M A C R O S ### +############################################################################## +############################################################################## + + macro (ADD_H5_TEST resultfile resultcode) + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5WATCH_ARGS-h5watch-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5watch>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.ddl" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5WATCH_ARGS-h5watch-${resultfile} PROPERTIES DEPENDS ${last_test}) + set (last_test "H5WATCH_ARGS-h5watch-${resultfile}") + endif () + endmacro () + + macro (ADD_H5_WATCH resultfile resultcode) + if (NOT HDF5_ENABLE_USING_MEMCHECKER) + add_test ( + NAME H5WATCH-${resultfile}-clear-objects + COMMAND ${CMAKE_COMMAND} + -E remove + ${resultfile}.h5 + ) + set_tests_properties (H5WATCH-${resultfile}-clear-objects PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + add_test ( + NAME H5WATCH-${resultfile} + COMMAND "${CMAKE_COMMAND}" + -D "TEST_PROGRAM=$<TARGET_FILE:h5watch>" + -D "TEST_ARGS:STRING=${ARGN}" + -D "TEST_FOLDER=${PROJECT_BINARY_DIR}/testfiles" + -D "TEST_OUTPUT=${resultfile}.out" + -D "TEST_EXPECT=${resultcode}" + -D "TEST_REFERENCE=${resultfile}.txt" + -P "${HDF_RESOURCES_EXT_DIR}/runTest.cmake" + ) + set_tests_properties (H5WATCH-${resultfile} PROPERTIES DEPENDS H5WATCH-${resultfile}-clear-objects) + endif () + endmacro () + +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## + +# Check to see if the VFD specified by the HDF5_DRIVER environment variable +# supports SWMR. +set (SWMR_INCOMPAT ${hl_swmr_check_compat_vfd}) + +if (NOT SWMR_INCOMPAT) +# Remove any output file left over from previous test run + add_test ( + NAME H5WATCH-clearall-objects + COMMAND ${CMAKE_COMMAND} + -E remove + WATCH.h5 + ) + if (NOT "${last_test}" STREQUAL "") + set_tests_properties (H5WATCH-clearall-objects PROPERTIES DEPENDS ${last_test}) + endif () + set (last_test "H5WATCH-clearall-objects") + +################################################################################################# +# # +# WATCH.h5: file with various types of datasets for testing-- # +# The following datasets are chunked, H5D_ALLOC_TIME_INCR, max. dimensional setting: # +# DSET_ONE: one-dimensional dataset # +# DSET_TWO: two-dimensional dataset # +# DSET_CMPD: one-dimensional dataset with compound type # +# DSET_CMPD_ESC: one-dimensional dataset with compound type & escape/separator characters # +# DSET_CMPD_TWO: two-dimensional dataset with compound type # +# # +# The following datasets are one-dimensional, chunked, max. dimension setting: # +# DSET_ALLOC_EARLY: dataset with H5D_ALLOC_TIME_EARLY # +# DSET_ALLOC_LATE: dataset H5D_ALLOC_TIME_LATE # +# # +# The following datasets are one-dimensional: # +# DSET_NONE: fixed dimension setting, contiguous, H5D_ALLOC_TIME_LATE # +# DSET_NOMAX: fixed dimension setting, chunked, H5D_ALLOC_TIME_INCR # +# # +################################################################################################# +# create the output files to be used. + add_test (NAME H5WATCH-h5watchgentest COMMAND $<TARGET_FILE:h5watchgentest>) + set_tests_properties (H5WATCH-h5watchgentest PROPERTIES WORKING_DIRECTORY "${PROJECT_BINARY_DIR}/testfiles") + set_tests_properties (H5WATCH-h5watchgentest PROPERTIES DEPENDS "H5WATCH-clearall-objects") + set (last_test "H5WATCH-h5watchgentest") + +# Test on --help options + ADD_H5_TEST (w-help1 0 --help) +# +# Tests on expected failures + ADD_H5_TEST (w-err-dset1 1 WATCH.h5) + ADD_H5_TEST (w-err-dset2 1 WATCH.h5/group/DSET_CMPD) + ADD_H5_TEST (w-err-dset-none 1 WATCH.h5/DSET_NONE) + ADD_H5_TEST (w-err-dset-nomax 1 WATCH.h5/DSET_NOMAX) + ADD_H5_TEST (w-err-file 1 ../WATCH.h5/DSET_CMPD) + ADD_H5_TEST (w-err-width 1 --width=-8 WATCH.h5/DSET_ONE) + ADD_H5_TEST (w-err-poll 1 --polling=-8 WATCH.h5/DSET_ONE) + ADD_H5_TEST (w-err-poll0 1 --polling=0 WATCH.h5/DSET_ONE) +# +# Tests on invalid field names via --fields option for a compound typed dataset: DSET_CMPD + ADD_H5_TEST (w-err-cmpd1 1 --fields=fieldx WATCH.h5/DSET_CMPD) + ADD_H5_TEST (w-err-cmpd2 1 --fields=field1,field2. WATCH.h5/DSET_CMPD) + ADD_H5_TEST (w-err-cmpd3 1 --fields=field1,field2, WATCH.h5/DSET_CMPD) + ADD_H5_TEST (w-err-cmpd4 1 --fields=field1,field2.b.k WATCH.h5/DSET_CMPD) + ADD_H5_TEST (w-err-cmpd5 1 --fields=field1 --fields=field2.b.k WATCH.h5/DSET_CMPD) +# +endif () diff --git a/hl/tools/h5watch/Makefile.am b/hl/tools/h5watch/Makefile.am new file mode 100644 index 0000000..c60fceb --- /dev/null +++ b/hl/tools/h5watch/Makefile.am @@ -0,0 +1,50 @@ +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +## +## Makefile.am +## Run automake to generate a Makefile.in from this file. +# +# HDF5 Library Makefile(.in) +# + +include $(top_srcdir)/config/commence.am + +# Include src and tools/lib directories +AM_CPPFLAGS+=-I$(top_srcdir)/src -I$(top_srcdir)/tools/lib -I$(top_srcdir)/hl/src -I$(top_srcdir)/hl/test + +# These are our main targets, the tools +TEST_SCRIPT=testh5watch.sh +check_SCRIPTS=$(TEST_SCRIPT) +SCRIPT_DEPEND=swmr_check_compat_vfd$(EXEEXT) extend_dset$(EXEEXT) h5watch$(EXEEXT) + +bin_PROGRAMS=h5watch +noinst_PROGRAMS=swmr_check_compat_vfd h5watchgentest extend_dset + +# Add h5watch specific linker flags here +h5watch_LDFLAGS = $(LT_STATIC_EXEC) $(AM_LDFLAGS) + +# Programs all depend on the hdf5 library, the tools library, and the HL +# library. +LDADD=$(LIBH5_HL) $(LIBH5TOOLS) $(LIBHDF5) + +# Add extend_dset specific preprocessor flags here +# (add the main test subdirectory to the include file path) +extend_dset_CPPFLAGS=$(AM_CPPFLAGS) -I$(top_srcdir)/test +# Add extend_dset specific library flags here +# (add the main test library to the list of libraries) +extend_dset_LDADD=$(LDADD) $(LIBH5TEST) $(LIBHDF5) + +# +CHECK_CLEANFILES+=*.h5 +DISTCLEANFILES=testh5watch.sh + +include $(top_srcdir)/config/conclude.am diff --git a/hl/tools/h5watch/Makefile.in b/hl/tools/h5watch/Makefile.in new file mode 100644 index 0000000..3f91984 --- /dev/null +++ b/hl/tools/h5watch/Makefile.in @@ -0,0 +1,1529 @@ +# Makefile.in generated by automake 1.15 from Makefile.am. +# @configure_input@ + +# Copyright (C) 1994-2014 Free Software Foundation, Inc. + +# This Makefile.in is free software; the Free Software Foundation +# gives unlimited permission to copy and/or distribute it, +# with or without modifications, as long as this notice is preserved. + +# This program is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY, to the extent permitted by law; without +# even the implied warranty of MERCHANTABILITY or FITNESS FOR A +# PARTICULAR PURPOSE. + +@SET_MAKE@ + +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. 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\ + echo "" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)" >> $${log}; \ + echo "============================" >> $${log}; \ + echo "Finished testing $${tname} $(TEST_FLAGS)"; \ + cat $${log}; \ + fi; \ + echo "============================"; \ + fi + +# Actual execution of check-p. +build-check-p: $(LIB) $(PROGS) $(chk_TESTS) + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` begin `date`==="; \ + fi + @if test -n "$(TEST_PROG_PARA)"; then \ + echo "**** Hint ****"; \ + echo "Parallel test files reside in the current directory" \ + "by default."; \ + echo "Set HDF5_PARAPREFIX to use another directory. E.g.,"; \ + echo " HDF5_PARAPREFIX=/PFS/user/me"; \ + echo " export HDF5_PARAPREFIX"; \ + echo " make check"; \ + echo "**** end of Hint ****"; \ + fi + @for test in $(TEST_PROG_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ \ + RUNEXEC="$(RUNPARALLEL)" || exit 1; \ + fi; \ + done + @for test in $(TEST_SCRIPT_PARA) dummy; do \ + if test $$test != dummy; then \ + $(MAKE) $(AM_MAKEFLAGS) $$test.chkexe_ || exit 1; \ + fi; \ + done + @if test -n "$(TEST_PROG_PARA)$(TEST_SCRIPT_PARA)"; then \ + echo "===Parallel tests in `echo ${PWD} | sed -e s:.*/::` ended `date`===";\ + fi + +# Run test with different Virtual File Driver +check-vfd: $(LIB) $(PROGS) $(chk_TESTS) + @for vfd in $(VFD_LIST) dummy; do \ + if test $$vfd != dummy; then \ + echo "============================"; \ + echo "Testing Virtual File Driver $$vfd"; \ + echo "============================"; \ + $(MAKE) $(AM_MAKEFLAGS) check-clean || exit 1; \ + HDF5_DRIVER=$$vfd $(MAKE) $(AM_MAKEFLAGS) check || exit 1; \ + fi; \ + done + +# Tell versions [3.59,3.63) of GNU make to not export all variables. +# Otherwise a system limit (for SysV at least) may be exceeded. +.NOEXPORT: diff --git a/hl/tools/h5watch/extend_dset.c b/hl/tools/h5watch/extend_dset.c new file mode 100644 index 0000000..957db10 --- /dev/null +++ b/hl/tools/h5watch/extend_dset.c @@ -0,0 +1,424 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "h5hltest.h" + +/* + * Extending datasets in WATCH.h5 generated by h5watchgentest.c + */ +#define DSET_ONE "DSET_ONE" +#define DSET_TWO "DSET_TWO" +#define DSET_CMPD "DSET_CMPD" +#define DSET_CMPD_ESC "DSET_CMPD_ESC" +#define DSET_CMPD_TWO "DSET_CMPD_TWO" +#define DSET_ALLOC_LATE "DSET_ALLOC_LATE" +#define DSET_ALLOC_EARLY "DSET_ALLOC_EARLY" + +/* The message sent by this process (extend_dset) to the test script to start "h5watch" */ +#define WRITER_MESSAGE "writer_message" +/* The message received from the test script to start extending dataset */ +#define READER_MESSAGE "reader_message" + +/* Size of data buffer */ +#define TEST_BUF_SIZE 100 + +static herr_t extend_dset_two(const char *file, char *dname, int action1, int action2); +static herr_t extend_dset_one(const char *file, char *dname, int action); + + +/* Data structures for datasets with compound data type */ +typedef struct sub22_t { + unsigned int a; + unsigned int b; + unsigned int c; +} sub22_t; + +typedef struct sub2_t { + unsigned int a; + sub22_t b; + unsigned int c; +} sub2_t; + +typedef struct sub4_t { + unsigned int a; + unsigned int b; +} sub4_t; + +typedef struct set_t { + unsigned int field1; + sub2_t field2; + double field3; + sub4_t field4; +} set_t; + +/* + *********************************************************************** + * + * Extending a two-dimensional dataset by action1 and action2. + * --action1 and action2 can be a positive # or negative # or 0. + * + *********************************************************************** + */ +static herr_t +extend_dset_two(const char *file, char *dname, int action1, int action2) +{ + hid_t fid = -1; /* file id */ + hid_t fapl = -1; /* file access property list id */ + hid_t did = -1; /* dataset id */ + hid_t sid = -1; /* dataspace id */ + hid_t dtid = -1; /* dataset's datatype id */ + int ndims; /* # of dimension sizes */ + unsigned i, j; /* local index variable */ + hsize_t ext_dims[2]; /* new dimension sizes after extension */ + hsize_t cur_dims[2]; /* current dimension sizes */ + size_t dtype_size; /* size of the dataset's datatype */ + unsigned num_elmts; /* number of elements in the dataset */ + int *ibuf = NULL; /* buffer for storing retrieved elements (integer) */ + set_t *cbuf = NULL; /* buffer for storing retrieved elemnets (compound) */ + + /* Allocate memory */ + if(NULL == (ibuf = (int *)HDcalloc(TEST_BUF_SIZE, sizeof(int)))) + goto error; + if(NULL == (cbuf = (set_t *)HDcalloc(TEST_BUF_SIZE, sizeof(set_t)))) + goto error; + + /* Create a copy of file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) + goto error; + + /* Set to use the latest library format */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + goto error; + + /* Open the file and dataset with SWMR write */ + if((fid = H5Fopen(file, H5F_ACC_RDWR|H5F_ACC_SWMR_WRITE, fapl)) < 0) + goto error; + + if((did = H5Dopen2(fid, dname, H5P_DEFAULT)) < 0) + goto error; + + /* Send message to the test script to start "h5watch" */ + h5_send_message(WRITER_MESSAGE, NULL, NULL); + + if((sid = H5Dget_space(did)) < 0) + goto error; + + if((ndims = H5Sget_simple_extent_ndims(sid)) < 0) + goto error; + + /* Get the size of the dataset's datatype */ + if((dtype_size = H5LDget_dset_type_size(did, NULL)) == 0) + goto error; + + /* Get the dataset's data type */ + if((dtid = H5Tget_native_type(H5Dget_type(did), H5T_DIR_DEFAULT)) < 0) + goto error; + + /* Wait for message from the test script to start extending dataset */ + if(h5_wait_message(READER_MESSAGE) < 0) + goto error; + + /* sleep to emulate about 2 seconds of application operation */ + HDsleep(2); + + /* Get current dimension sizes */ + if(H5LDget_dset_dims(did, cur_dims) < 0) + goto error; + + /* Set up the new extended dimension sizes */ + ext_dims[0] = cur_dims[0] + (hsize_t)action1; + ext_dims[1] = cur_dims[1] + (hsize_t)action2; + + /* Extend the dataset */ + if(H5Dset_extent(did, ext_dims) < 0) + goto error; + + num_elmts = 1; + for(j = 0; j < (unsigned)ndims; j++) + num_elmts *= (unsigned)ext_dims[j]; + + /* Compound type */ + if(!HDstrcmp(dname, DSET_CMPD_TWO)) { + + HDmemset(cbuf, 0, TEST_BUF_SIZE * sizeof(set_t)); + for(j = 0; j < num_elmts; j++) { + cbuf[j].field1 = action1; + cbuf[j].field2.a = action1; + cbuf[j].field2.c = action1; + cbuf[j].field2.b.a = action1; + cbuf[j].field2.b.b = action1; + cbuf[j].field2.b.c = action1; + cbuf[j].field3 = action1; + cbuf[j].field4.a = action1; + cbuf[j].field4.b = action1; + } /* end for */ + + /* Write to the dataset */ + if(H5Dwrite(did, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, cbuf) < 0) + goto error; + + } else { /* Integer type */ + HDmemset(ibuf, 0, TEST_BUF_SIZE * sizeof(int)); + for(j = 0; j < num_elmts; j++) + ibuf[j] = action1; + + /* Write to the dataset */ + if(H5Dwrite(did, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, ibuf) < 0) + goto error; + } /* end if-else */ + + if(H5Dflush(did) < 0) + goto error; + + /* Closing */ + if(H5Tclose(dtid) < 0) goto error; + if(H5Dclose(did) < 0) goto error; + if(H5Pclose(fapl) < 0) goto error; + if(H5Fclose(fid) < 0) goto error; + + if(ibuf) HDfree(ibuf); + if(cbuf) HDfree(cbuf); + + return SUCCEED; + +error: + H5E_BEGIN_TRY + H5Tclose(dtid); + H5Dclose(did); + H5Pclose(fapl); + H5Fclose(fid); + H5E_END_TRY + + if(ibuf) + HDfree(ibuf); + if(cbuf) + HDfree(cbuf); + + return FAIL; + +} /* end extend_dset_two() */ + +/* + *********************************************************************** + * + * Extending a one-dimensional dataset by action: + * --action can be a positive # or negative # or 0. + * + *********************************************************************** + */ +static herr_t +extend_dset_one(const char *file, char *dname, int action) +{ + hid_t fid = -1; /* file id */ + hid_t fapl = -1; /* file access property list id */ + hid_t did = -1; /* dataset id */ + hid_t dtid = -1; /* dataset's datatype id */ + hid_t sid = -1; /* dataspace id */ + hid_t mid = -1; /* memory space id */ + unsigned i, j; /* local index variable */ + hsize_t cur_dims[1]; /* current dimension sizes */ + hsize_t ext_dims[1]; /* new dimension sizes after extension */ + hsize_t offset[1]; /* starting offsets of appended data */ + hsize_t count[1]; /* dimension sizes of appended data */ + size_t dtype_size; /* size of the dataset's datatype */ + int *ibuf = NULL; /* buffer for storing retrieved elements (integer) */ + set_t *cbuf = NULL; /* buffer for storing retrieved elemnets (compound) */ + + /* Allocate memory */ + if(NULL == (ibuf = (int *)HDcalloc(TEST_BUF_SIZE, sizeof(int)))) + goto error; + if(NULL == (cbuf = (set_t *)HDcalloc(TEST_BUF_SIZE, sizeof(set_t)))) + goto error; + + /* Create a copy of file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) + goto error; + + /* Set to use the latest library format */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + goto error; + + /* Open the file and dataset with SWMR write */ + if((fid = H5Fopen(file, H5F_ACC_RDWR|H5F_ACC_SWMR_WRITE, fapl)) < 0) + goto error; + + /* Send message to the test script to start "h5watch" */ + h5_send_message(WRITER_MESSAGE, NULL, NULL); + + if((did = H5Dopen2(fid, dname, H5P_DEFAULT)) < 0) + goto error; + + /* Get size of the dataset's datatype */ + if((dtype_size = H5LDget_dset_type_size(did, NULL)) == 0) + goto error; + + /* Get dataset's datatype */ + if((dtid = H5Tget_native_type(H5Dget_type(did), H5T_DIR_DEFAULT)) < 0) + goto error; + + /* Wait for message from the test script to start extending dataset */ + if(h5_wait_message(READER_MESSAGE) < 0) + goto error; + + /* sleep to emulate about 2 seconds of application operation */ + HDsleep(2); + + /* Get current dimension sizes */ + if(H5LDget_dset_dims(did, cur_dims) < 0) + goto error; + + /* Set up the new extended dimension sizes */ + ext_dims[0] = cur_dims[0] + (hsize_t)action; + + /* Extend the dataset */ + if(H5Dset_extent(did, ext_dims) < 0) + goto error; + + /* Write to the new appended region of the dataset */ + if(action > 0) { + + /* Select the extended region */ + offset[0] = cur_dims[0]; + count[0] = (hsize_t)action; + if((sid = H5Dget_space(did)) < 0) + goto error; + if(H5Sselect_hyperslab(sid, H5S_SELECT_SET, offset, NULL, count, NULL) < 0) + goto error; + + /* Set up memory space and get dataset's datatype */ + if((mid = H5Screate_simple(1, count, NULL)) < 0) + goto error; + + /* Initialize data for the extended region of the dataset */ + /* Compound type */ + if(!HDstrcmp(dname, DSET_CMPD) || !HDstrcmp(dname, DSET_CMPD_ESC)) { + + HDmemset(cbuf, 0, TEST_BUF_SIZE * sizeof(set_t)); + for(j = 0; j < (unsigned)action; j++) { + cbuf[j].field1 = j + 1; + cbuf[j].field2.a = j + 2; + cbuf[j].field2.b.a = j + 2; + cbuf[j].field2.b.b = j + 2; + cbuf[j].field2.b.c = j + 2; + cbuf[j].field2.c = j + 2; + + cbuf[j].field3 = j + 3; + + cbuf[j].field4.a = j + 4; + cbuf[j].field4.b = j + 4; + } /* end for */ + + /* Write to the extended region of the dataset */ + if(H5Dwrite(did, dtid, mid, sid, H5P_DEFAULT, cbuf) < 0) + goto error; + } else { /* Integer type */ + + HDmemset(ibuf, 0, TEST_BUF_SIZE * sizeof(int)); + for(j = 0; j < (unsigned)action; j++) + ibuf[j] = (int)j; + + /* Write to the extended region of the dataset */ + if(H5Dwrite(did, dtid, mid, sid, H5P_DEFAULT, ibuf) < 0) + goto error; + } /* end if-else */ + + /* Closing */ + if(H5Sclose(sid) < 0) goto error; + if(H5Sclose(mid) < 0) goto error; + } /* end if */ + + if(H5Dflush(did) < 0) + goto error; + + /* Closing */ + if(H5Tclose(dtid) < 0) goto error; + if(H5Dclose(did) < 0) goto error; + if(H5Pclose(fapl) < 0) goto error; + if(H5Fclose(fid) < 0) goto error; + + if(ibuf) HDfree(ibuf); + if(cbuf) HDfree(cbuf); + + return SUCCEED; + +error: + H5E_BEGIN_TRY + H5Sclose(sid); + H5Sclose(mid); + H5Tclose(dtid); + H5Dclose(did); + H5Pclose(fapl); + H5Fclose(fid); + H5E_END_TRY + + if(ibuf) + HDfree(ibuf); + if(cbuf) + HDfree(cbuf); + + return FAIL; +} /* end extend_dset_one() */ + + +/* + *********************************************************************** + * + * Usage: extend_dset xx.h5 dname action1 action2 + * --action1 and action2 can be a positive # or negative # or 0. + * + *********************************************************************** + */ +int +main(int argc, const char *argv[]) +{ + char *dname = NULL; + char *fname = NULL; + int action1, action2; + + if(argc != 5) { + HDfprintf(stderr, "Should have file name, dataset name, and the extended amount...\n"); + goto error; + } /* end if */ + + /* Get the dataset name to be extended */ + fname = HDstrdup(argv[1]); + dname = HDstrdup(argv[2]); + action1 = HDatoi(argv[3]); + action2 = HDatoi(argv[4]); + + if(!HDstrcmp(dname, DSET_CMPD) || !HDstrcmp(dname, DSET_CMPD_ESC)) { + if(extend_dset_one(fname, dname, action1) < 0) + goto error; + } else if(!HDstrcmp(dname, DSET_ONE) || + !HDstrcmp(dname, DSET_ALLOC_LATE) || + !HDstrcmp(dname, DSET_ALLOC_EARLY)) { + if(extend_dset_one(fname, dname, action1) < 0) + goto error; + } else if(!HDstrcmp(dname, DSET_TWO) || + !HDstrcmp(dname, DSET_CMPD_TWO)) { + if(extend_dset_two(fname, dname, action1, action2) < 0) + goto error; + } else { + HDfprintf(stdout, "Dataset cannot be extended...\n"); + goto error; + } /* end if-else */ + + HDexit(EXIT_SUCCESS); + +error: + if(dname) + HDfree(dname); + if(fname) + HDfree(fname); + HDexit(EXIT_FAILURE); +} /* end main() */ diff --git a/hl/tools/h5watch/h5watch.c b/hl/tools/h5watch/h5watch.c new file mode 100644 index 0000000..11514b0 --- /dev/null +++ b/hl/tools/h5watch/h5watch.c @@ -0,0 +1,970 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "h5tools.h" +#include "h5tools_dump.h" +#include "H5LDprivate.h" + +/* + * Note: This tool used private routine + */ +#define PROGRAMNAME "h5watch" /* Name of tool */ +#define FIELD_SEP "," /* nested field separator */ +#define DEFAULT_RETRY 50 /* number of times to try opening the file */ + + +/* + * Note:(see comments in hl/src/H5LDprivate.h) + * This tool uses private routines H5LD_construct_vector()and H5LD_clean_vector() + * This tool uses H5LD_memb_t data structure declared in H5LDprivate.h + */ + +const char *progname = "h5watch"; /* tool name */ +static char *g_list_of_fields = NULL; /* command line input for "list_of_fields" */ +static char *g_dup_fields = NULL; /* copy of "list_of_fields" */ +static H5LD_memb_t **g_listv = NULL; /* vector info for "list_of_fields" */ + +static hbool_t g_monitor_size_only = FALSE; /* monitor changes in dataset dimension sizes */ +static unsigned g_polling_interval = 1; /* polling interval to check appended data */ + +static hbool_t g_label = FALSE; /* label compound values */ +static int g_display_width = 80; /* output width in characters */ +static hbool_t g_simple_output = FALSE; /* make output more machine-readable */ +static unsigned g_retry = DEFAULT_RETRY; /* # of times to try opening the file if somehow file is unstable */ +static hbool_t g_display_hex = FALSE; /* display data in hexadecimal format : LATER */ +static hbool_t g_user_interrupt = FALSE; /* Flag to indicate that user interrupted execution */ + +static herr_t doprint(hid_t did, hsize_t *start, hsize_t *block, int rank); +static herr_t slicendump(hid_t did, hsize_t *prev_dims, hsize_t *cur_dims, + hsize_t *start, hsize_t *block, int rank, int subrank); +static herr_t monitor_dataset(hid_t fid, char *dsetname); +static herr_t process_cmpd_fields(hid_t fid, char *dsetname); +static herr_t check_dataset(hid_t fid, char *dsetname); +static void leave(int ret); +static void usage(const char *prog); +static void parse_command_line(int argc, const char *argv[]); + + +/* + * Command-line options: The user can only specify long-named parameters. + * The long-named ones can be partially spelled. When + * adding more, make sure that they don't clash with each other. + */ +static const char *s_opts ="?"; +static struct long_options l_opts[] = { + { "help", no_arg, 'h' }, + { "hel", no_arg, 'h' }, + { "dim", no_arg, 'd' }, + { "di", no_arg, 'd' }, + { "label", no_arg, 'l' }, + { "labe", no_arg, 'l' }, + { "lab", no_arg, 'l' }, + { "la", no_arg, 'l' }, + { "simple", no_arg, 'S' }, + { "simpl", no_arg, 'S' }, + { "simp", no_arg, 'S' }, + { "sim", no_arg, 'S' }, + { "si", no_arg, 'S' }, + { "hexdump", no_arg, 'x' }, + { "hexdum", no_arg, 'x' }, + { "hexdu", no_arg, 'x' }, + { "hexd", no_arg, 'x' }, + { "hex", no_arg, 'x' }, + { "width", require_arg, 'w' }, + { "widt", require_arg, 'w' }, + { "wid", require_arg, 'w' }, + { "wi", require_arg, 'w' }, + { "polling", require_arg, 'p' }, + { "pollin", require_arg, 'p' }, + { "polli", require_arg, 'p' }, + { "poll", require_arg, 'p' }, + { "pol", require_arg, 'p' }, + { "po", require_arg, 'p' }, + { "fields", require_arg, 'f' }, + { "field", require_arg, 'f' }, + { "fiel", require_arg, 'f' }, + { "fie", require_arg, 'f' }, + { "fi", require_arg, 'f' }, + { "version", no_arg, 'V' }, + { "versio", no_arg, 'V' }, + { "versi", no_arg, 'V' }, + { "vers", no_arg, 'V' }, + { "ver", no_arg, 'V' }, + { "ve", no_arg, 'V' }, + { NULL, 0, '\0' } +}; + +/*------------------------------------------------------------------------- + * Function: doprint() + * + * Purpose: Prepare to print the dataset's appended data. + * Call the tools library routine h5tools_dump_dset() to do the printing. + * (This routine is mostly copied from dump_dataset_values() in tools/h5ls/h5ls.c + * and modified accordingly). + * + * Return: 0 on success; negative on failure + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static herr_t +doprint(hid_t did, hsize_t *start, hsize_t *block, int rank) +{ + h5tools_context_t ctx; /* print context */ + h5tool_format_t info; /* Format info for the tools library */ + static char fmt_double[16], fmt_float[16]; /* Format info */ + struct subset_t subset; /* Subsetting info */ + hsize_t ss_start[H5S_MAX_RANK]; /* Info for hyperslab */ + hsize_t ss_stride[H5S_MAX_RANK]; /* Info for hyperslab */ + hsize_t ss_block[H5S_MAX_RANK]; /* Info for hyperslab */ + hsize_t ss_count[H5S_MAX_RANK]; /* Info for hyperslab */ + int i; /* Local index variable */ + herr_t ret_value = SUCCEED; /* Return value */ + + /* Subsetting information for the tools library printing routines */ + subset.start.data = ss_start; + subset.stride.data = ss_stride; + subset.block.data = ss_block; + subset.count.data = ss_count; + + /* Initialize subsetting information */ + for(i = 0; i < rank; i++) { + subset.stride.data[i] = 1; + subset.count.data[i] = 1; + subset.start.data[i] = start[i]; + subset.block.data[i] = block[i]; + } /* end for */ + + HDmemset(&ctx, 0, sizeof(ctx)); + + /* Set to all default values and then override */ + HDmemset(&info, 0, sizeof info); + + if(g_simple_output) { + info.idx_fmt = ""; + info.line_ncols = 65535; /*something big*/ + info.line_per_line = 1; + info.line_multi_new = 0; + info.line_pre = " "; + info.line_cont = " "; + + info.arr_pre = ""; + info.arr_suf = ""; + info.arr_sep = " "; + + info.cmpd_pre = ""; + info.cmpd_suf = ""; + info.cmpd_sep = " "; + + /* The "fields" selected by the user */ + info.cmpd_listv = (const struct H5LD_memb_t * const *)g_listv; + + if(g_label) + info.cmpd_name = "%s="; + + info.elmt_suf1 = " "; + info.str_locale = ESCAPE_HTML; + + } else { + info.idx_fmt = "(%s)"; + if(!g_display_width) { + info.line_ncols = 65535; + info.line_per_line = 1; + } /* end if */ + else + info.line_ncols = (unsigned)g_display_width; + + info.line_multi_new = 1; + + /* The "fields" selected by the user */ + info.cmpd_listv = (const struct H5LD_memb_t * const *)g_listv; + if(g_label) + info.cmpd_name = "%s="; + info.line_pre = " %s "; + info.line_cont = " %s "; + info.str_repeat = 8; + } /* end else */ + + /* Floating point types should display full precision */ + sprintf(fmt_float, "%%1.%dg", FLT_DIG); + info.fmt_float = fmt_float; + sprintf(fmt_double, "%%1.%dg", DBL_DIG); + info.fmt_double = fmt_double; + + info.dset_format = "DSET-%s "; + info.dset_hidefileno = 0; + + info.obj_format = "-%lu:"H5_PRINTF_HADDR_FMT; + info.obj_hidefileno = 0; + + info.dset_blockformat_pre = "%sBlk%lu: "; + info.dset_ptformat_pre = "%sPt%lu: "; + + info.line_indent = ""; + + if(g_display_hex) { + /* Print all data in hexadecimal format if the `-x' or `--hexdump' + * command line switch was given. */ + info.raw = TRUE; + } /* end if */ + + /* Print the values. */ + if((ret_value = h5tools_dump_dset(stdout, &info, &ctx, did, &subset)) < 0) + error_msg("unable to print data\n"); + + HDfprintf(stdout, "\n"); + + return ret_value; + +} /* end doprint() */ + +/*------------------------------------------------------------------------- + * Function: slicendump + * + * Purpose: To dump the slice for each dimension + * For example: prev_dims[2] = {5, 4}; cur_dims[2] = {7, 8} + * This routine will dump data as follows: + * {0, 3} to {0, 7} (1x4 elements) + * {1, 3} to {0, 7} (1x4 elements) + * {2, 3} to {0, 7} (1x4 elements) + * {3, 3} to {0, 7} (1x4 elements) + * {4, 3} to {0, 7} (1x4 elements) + * {5, 0} to {6, 7} (2x8 elements) + * + * Return: Non-negative on success + * Negative on failure + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static herr_t +slicendump(hid_t did, hsize_t *prev_dims, hsize_t *cur_dims, hsize_t *start, hsize_t *block, int rank, int subrank) +{ + int i; /* Local index variable */ + int ind; /* Index for the current rank */ + herr_t ret_value = SUCCEED; /* Return value */ + + ind = rank - subrank; + + if((subrank - 1) > 0) { + /* continue onto the next dimension */ + for (i = 0; i < (hssize_t)MIN(prev_dims[ind], cur_dims[ind]); i++){ + start[ind] = (hsize_t)i; + if((ret_value = slicendump(did, prev_dims, cur_dims, start, block, rank, subrank-1)) < 0) + goto done; + } /* end for */ + } /* end if */ + + /* this dimension remains the same or shrinking */ + if(cur_dims[ind] <= prev_dims[ind]) + goto done; + + /* select first the slice for the faster changing dimension */ + /* select later the whole slice for the slower changing dimension */ + start[ind] = prev_dims[ind]; + block[ind] = cur_dims[ind] - prev_dims[ind]; + + for(i = ind + 1; i < rank; i++){ + start[i] = 0; + block[i] = cur_dims[i]; + } /* end for */ + + /* Print the appended data */ + ret_value = doprint(did, start, block, rank); + +done: + return ret_value; +} /* end slicendump() */ + + +/*------------------------------------------------------------------------- + * Function: monitor_dataset + * + * Purpose: To poll a dataset periodically for changes in dimension sizes. + * For dataset with unchanged and/or decreased dimension sizes: + * it just prints the dimension size changes + * For dataset with increase in at least one of its dimension sizes: + * it will print the new appended data to the dataset + * + * Return: Non-negative on success: dataset can be monitored + * Negative on failure: dataset cannot be monitored + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static herr_t +monitor_dataset(hid_t fid, char *dsetname) +{ + hid_t did; /* dataset id */ + hid_t sid; /* dataspace id */ + int ndims; /* # of dimensions in the dataspace */ + int i, u; /* local index variable */ + hsize_t prev_dims[H5S_MAX_RANK]; /* current dataspace dimensions */ + hsize_t cur_dims[H5S_MAX_RANK]; /* previous dataspace dimensions */ + herr_t ret_value = SUCCEED; /* return value */ + + HDfprintf(stdout, "Monitoring dataset %s...\n", dsetname); + + /* Open the dataset for minitoring */ + if((did = H5Dopen2(fid, dsetname, H5P_DEFAULT)) < 0) { + error_msg("error in opening dataset \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + if((sid = H5Dget_space(did)) < 0) { + error_msg("error in getting dataspace id for dataset \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Get the dataset's dimension sizes */ + if((ndims = H5Sget_simple_extent_dims(sid, prev_dims, NULL)) < 0) { + error_msg("unable to get dimensions sizes for \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + HDfflush(stdout); + + /* Loop until an error occurs or the user interrupts execution */ + while(!g_user_interrupt) { + + /* Refreshes the dataset */ + if(H5Drefresh(did) < 0) { + ret_value = FAIL; + goto done; + } + + /* Get the dataset's current dimension sizes */ + if(H5LDget_dset_dims(did, cur_dims) < 0) { + error_msg("unable to get dimension sizes for \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Check the dimension sizes */ + for(i = 0; i < ndims; i++) + if(cur_dims[i] != prev_dims[i]) + break; + + /* at least one dimension has changed */ + if(i != ndims) { + /* Printing changes in dimension sizes */ + for(u = 0; u < ndims; u++) { + HDfprintf(stdout, "dimension %u: %Hu->%Hu", (unsigned)u, prev_dims[u], cur_dims[u]); + if(cur_dims[u] > prev_dims[u]) + HDfprintf(stdout, " (increases)\n"); + else if(cur_dims[u] < prev_dims[u]) + HDfprintf(stdout, " (decreases)\n"); + else + HDfprintf(stdout, " (unchanged)\n"); + } + + /* Printing elements appended to the dataset if there is */ + if(!g_monitor_size_only) { + + /* See if at least one dimension size has increased */ + for(u = 0; u < ndims; u++) { + int j; + hsize_t start[H5S_MAX_RANK]; + hsize_t block[H5S_MAX_RANK]; + + /* Print the new appended data to the dataset */ + if(cur_dims[u] > prev_dims[u]) { + HDfprintf(stdout, " Data:\n"); + + for(j = 0; j < ndims; j++) { + start[j] = 0; + block[j] = 1; + } + + if((ret_value = slicendump(did, prev_dims, cur_dims, start, block, ndims, ndims)) < 0) + goto done; + break; + } + } /* end for */ + } + HDfflush(stdout); + } + + /* Save the current dimension sizes */ + HDmemcpy(prev_dims, cur_dims, (size_t)ndims * sizeof(hsize_t)); + + /* Sleep before next monitor */ + HDsleep(g_polling_interval); + } /* end while */ + + HDfflush(stdout); + +done: + /* Closing */ + H5E_BEGIN_TRY + H5Dclose(did); + H5E_END_TRY + + return(ret_value); +} /* monitor_dataset() */ + +/*------------------------------------------------------------------------- + * Function: process_cmpd_fields + * + * Purpose: To check whether the fields selected in "g_list_of_fields" + * are valid fields associated with the dataset. + * + * Return: 0 on success; negative on failure + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static herr_t +process_cmpd_fields(hid_t fid, char *dsetname) +{ + hid_t did=-1; /* dataset id */ + hid_t dtid=-1, tid=-1; /* dataset's data type id */ + size_t len; /* number of comma-separated fields in "g_list_of_fields" */ + herr_t ret_value = SUCCEED; /* Return value */ + + HDassert(g_list_of_fields && *g_list_of_fields); + + /* Open the dataset */ + if((did = H5Dopen2(fid, dsetname, H5P_DEFAULT)) < 0) { + error_msg("error in opening dataset \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Get the dataset's datatype */ + if(((dtid = H5Dget_type(did)) < 0) || (tid = H5Tget_native_type(dtid, H5T_DIR_DEFAULT)) < 0) { + error_msg("error in getting dataset's datatype\n"); + ret_value = FAIL; + goto done; + } + + /* Check to make sure that the dataset's datatype is compound type */ + if(H5Tget_class(dtid) != H5T_COMPOUND) { + error_msg("dataset should be compound type for <list_of_fields>\n"); + ret_value = FAIL; + goto done; + } + + /* Make a copy of "g_list_of_fields" */ + if((g_dup_fields = HDstrdup(g_list_of_fields)) == NULL) { + error_msg("error in duplicating g_list_of_fields\n"); + ret_value = FAIL; + goto done; + } + + /* Estimate the number of comma-separated fields in "g_list of_fields" */ + len = HDstrlen(g_list_of_fields)/2 + 2; + + /* Allocate memory for a list vector of H5LD_memb_t structures to store "g_list_of_fields" info */ + if((g_listv = (H5LD_memb_t **)HDcalloc(len, sizeof(H5LD_memb_t *))) == NULL) { + error_msg("error in allocating memory for H5LD_memb_t\n"); + ret_value = FAIL; + goto done; + } + + /* Process and store info for "g_listv" */ + if(H5LD_construct_vector(g_dup_fields, g_listv, tid) < 0) { + error_msg("error in processing <list_of_fields>\n"); + ret_value = FAIL; + goto done; + } + + /* Will free memory for g_listv and g_dup_fields when exiting from h5watch */ +done: + /* Closing */ + H5E_BEGIN_TRY + H5Tclose(dtid); + H5Tclose(tid); + H5Dclose(did); + H5E_END_TRY + return(ret_value); +} /* process_cmpd_fields() */ + + +/*------------------------------------------------------------------------- + * Function: check_dataset + * + * Purpose: To check whether a dataset can be monitored: + * A chunked dataset with unlimited or max. dimension setting + * + * Return: Non-negative on success: dataset can be monitored + * Negative on failure: dataset cannot be monitored + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static herr_t +check_dataset(hid_t fid, char *dsetname) +{ + hid_t did=-1; /* Dataset id */ + hid_t dcp=-1; /* Dataset creation property */ + hid_t sid=-1; /* Dataset's dataspace id */ + int ndims; /* # of dimensions in the dataspace */ + unsigned u; /* Local index variable */ + hsize_t cur_dims[H5S_MAX_RANK]; /* size of dataspace dimensions */ + hsize_t max_dims[H5S_MAX_RANK]; /* maximum size of dataspace dimensions */ + hbool_t unlim_max_dims = FALSE; /* whether dataset has unlimited or max. dimension setting */ + void *edata; + H5E_auto2_t func; + H5D_layout_t layout; + herr_t ret_value = SUCCEED; /* Return value */ + + /* Disable error reporting */ + H5Eget_auto2(H5E_DEFAULT, &func, &edata); + H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + + /* Open the dataset */ + if((did = H5Dopen2(fid, dsetname, H5P_DEFAULT)) < 0) { + error_msg("unable to open dataset \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Get dataset's creation property list */ + if((dcp = H5Dget_create_plist(did)) < 0) { + error_msg("unable to get dataset's creation property list \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Query dataset's layout; the layout should be chunked or virtual */ + if((layout = H5Pget_layout(dcp)) < 0) { + error_msg("unable to get dataset layout \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + if(layout != H5D_CHUNKED && layout != H5D_VIRTUAL) { + error_msg("\"%s\" should be a chunked or virtual dataset\n", dsetname); + ret_value = FAIL; + goto done; + } + + HDmemset(cur_dims, 0, sizeof cur_dims); + HDmemset(max_dims, 0, sizeof max_dims); + + /* Get dataset's dataspace */ + if((sid = H5Dget_space(did)) < 0) { + error_msg("can't get dataset's dataspace\"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Get dimension size of dataset's dataspace */ + if((ndims = H5Sget_simple_extent_dims(sid, cur_dims, max_dims)) < 0) { + error_msg("can't get dataspace dimensions for dataset \"%s\"\n", dsetname); + ret_value = FAIL; + goto done; + } + + /* Check whether dataset has unlimited dimension or max. dimension setting */ + for(u = 0; u < (unsigned)ndims; u++) + if(max_dims[u] == H5S_UNLIMITED || cur_dims[u] != max_dims[u]) { + unlim_max_dims = TRUE; + break; + } + + if(!unlim_max_dims) { + error_msg("\"%s\" should have unlimited or max. dimension setting\n", dsetname); + ret_value = FAIL; + } + +done: + H5Eset_auto2(H5E_DEFAULT, func, edata); + + /* Closing */ + H5E_BEGIN_TRY + H5Sclose(sid); + H5Pclose(dcp); + H5Dclose(did); + H5E_END_TRY + + return(ret_value); +} /* check_dataset() */ + + +/*------------------------------------------------------------------------- + * Function: leave + * + * Purpose: Close the H5 Tools library and exit + * + * Return: Does not return + * + * Programmer: Vailin Choi; August 2010 + * + * + *------------------------------------------------------------------------- + */ +static void +leave(int ret) +{ + h5tools_close(); + + exit(ret); +} + + +/*------------------------------------------------------------------------- + * Function: usage + * + * Purpose: Print the usage message about h5watch (only long options) + * + * Return: void + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static void +usage(const char *prog) +{ + HDfflush(stdout); + HDfprintf(stdout, "Usage: %s [OPTIONS] [OBJECT]\n", prog); + HDfprintf(stdout, "\n"); + HDfprintf(stdout, " OPTIONS\n"); + HDfprintf(stdout, " --help Print a usage message and exit.\n"); + HDfprintf(stdout, " --version Print version number and exit.\n"); + HDfprintf(stdout, " --label Label members of compound typed dataset.\n"); + HDfprintf(stdout, " --simple Use a machine-readable output format.\n"); + HDfprintf(stdout, " --dim Monitor changes in size of dataset dimensions only.\n"); + HDfprintf(stdout, " --width=N Set the number of columns to N for output.\n"); + HDfprintf(stdout, " A value of 0 sets the number of columns to the\n"); + HDfprintf(stdout, " maximum (65535). The default width is 80 columns.\n"); + HDfprintf(stdout, " --polling=N Set the polling interval to N (in seconds) when the\n"); + HDfprintf(stdout, " dataset will be checked for appended data. The default\n"); + HDfprintf(stdout, " polling interval is 1.\n"); + HDfprintf(stdout, " --fields=<list_of_fields>\n"); + HDfprintf(stdout, " Display data for the fields specified in <list_of_fields>\n"); + HDfprintf(stdout, " for a compound data type. <list_of_fields> can be\n"); + HDfprintf(stdout, " specified as follows:\n"); + HDfprintf(stdout, " 1) A comma-separated list of field names in a\n"); + HDfprintf(stdout, " compound data type. \",\" is the separator\n"); + HDfprintf(stdout, " for field names while \".\" is the separator\n"); + HDfprintf(stdout, " for a nested field.\n"); + HDfprintf(stdout, " 2) A single field name in a compound data type.\n"); + HDfprintf(stdout, " Can use this option multiple times.\n"); + HDfprintf(stdout, " Note that backslash is the escape character to avoid\n"); + HDfprintf(stdout, " characters in field names that conflict with the tool's\n"); + HDfprintf(stdout, " separators.\n"); + HDfprintf(stdout, "\n"); + HDfprintf(stdout, " OBJECT is specified as [<filename>/<path_to_dataset>/<dsetname>]\n"); + HDfprintf(stdout, " <filename> Name of the HDF5 file. It may be preceded by path\n"); + HDfprintf(stdout, " separated by slashes to the specified HDF5 file.\n"); + HDfprintf(stdout, " <path_to_dataset> Path separated by slashes to the specified dataset\n"); + HDfprintf(stdout, " <dsetname> Name of the dataset\n"); + HDfprintf(stdout, "\n"); + HDfprintf(stdout, " User can end the h5watch process by ctrl-C (SIGINT) or kill the process (SIGTERM).\n"); + +} /* usage() */ + + +/*------------------------------------------------------------------------- + * Function: parse_command_line + * + * Purpose: Parse the command line for h5watch (take only long options) + * + * Return: Success: Set the corresponding command flags and return void + * Failure: Exits program with EXIT_FAILURE value. + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +static void +parse_command_line(int argc, const char *argv[]) +{ + int opt; /* Command line option */ + int tmp; + + /* no arguments */ + if (argc == 1) { + usage(h5tools_getprogname()); + leave(EXIT_FAILURE); + } + + /* parse command line options */ + while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) { + switch ((char)opt) { + case '?': + case 'h': /* --help */ + usage(h5tools_getprogname()); + leave(EXIT_SUCCESS); + + case 'V': /* --version */ + print_version(progname); + leave(EXIT_SUCCESS); + break; + + case 'w': /* --width=N */ + g_display_width = (int)HDstrtol(opt_arg, NULL, 0); + if(g_display_width < 0) { + usage(h5tools_getprogname()); + leave(EXIT_FAILURE); + } + break; + + case 'd': /* --dim */ + g_monitor_size_only = TRUE; + break; + + case 'S': /* --simple */ + g_simple_output = TRUE; + break; + + case 'l': /* --label */ + g_label = TRUE; + break; + + case 'p': /* --polling=N */ + /* g_polling_interval = HDstrtod(opt_arg, NULL); */ + if((tmp = (int)HDstrtol(opt_arg, NULL, 10)) <= 0) { + usage(h5tools_getprogname()); + leave(EXIT_FAILURE); + } + g_polling_interval = (unsigned)tmp; + break; + + case 'f': /* --fields=<list_of_fields> */ + if(g_list_of_fields == NULL) { + if((g_list_of_fields = HDstrdup(opt_arg)) == NULL) { + error_msg("memory allocation failed (file %s:line %d)\n", + __FILE__, __LINE__); + leave(EXIT_FAILURE); + } + } else { + char *str; + + if((str = HDstrdup(opt_arg)) == NULL) { + error_msg("memory allocation failed (file %s:line %d)\n", + __FILE__, __LINE__); + leave(EXIT_FAILURE); + } + if((g_list_of_fields = (char *)HDrealloc(g_list_of_fields, HDstrlen(g_list_of_fields) + HDstrlen(str) + 2)) == NULL) { + error_msg("memory allocation failed (file %s:line %d)\n", + __FILE__, __LINE__); + leave(EXIT_FAILURE); + + } + HDstrcat(g_list_of_fields, FIELD_SEP); + HDstrcat(g_list_of_fields, str); + } + + break; + + default: + usage(h5tools_getprogname()); + leave(EXIT_FAILURE); + } + } + + + /* check for object to be processed */ + if (argc <= opt_ind) { + error_msg("missing dataset name\n"); + usage(h5tools_getprogname()); + leave(EXIT_FAILURE); + } +} /* parse_command_line() */ + + +/*------------------------------------------------------------------------- + * Function: catch_signal + * + * Purpose: The signal handler to catch the signals: + * SIGTERM and SIGINT and set flag to get out of the main loop + * + * Return: No return + * + * Programmer: Vailin Choi; November 2014 + * + *------------------------------------------------------------------------- + */ +static void catch_signal(int H5_ATTR_UNUSED signo) +{ + /* Set the flag to get out of the main loop */ + g_user_interrupt = TRUE; +} /* catch_signal() */ + + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: h5watch + * + * Return: Success: 0 + * Failure: 1 + * + * Programmer: Vailin Choi; August 2010 + * + *------------------------------------------------------------------------- + */ +int +main(int argc, const char *argv[]) +{ + char drivername[50]; /* VFD name */ + char *fname = NULL; /* File name */ + char *dname = NULL; /* Dataset name */ + void *edata; /* Error reporting */ + H5E_auto2_t func; /* Error reporting */ + char *x; /* Temporary string pointer */ + hid_t fid = -1; /* File ID */ + hid_t fapl = -1; /* File access property list */ + + /* Set up tool name and exit status */ + h5tools_setprogname(PROGRAMNAME); + h5tools_setstatus(EXIT_SUCCESS); + + /* Disable error reporting */ + H5Eget_auto2(H5E_DEFAULT, &func, &edata); + H5Eset_auto2(H5E_DEFAULT, NULL, NULL); + + /* Initialize h5tools lib */ + h5tools_init(); + + /* To exit from h5watch for SIGTERM signal */ + if(HDsignal(SIGTERM, catch_signal) == SIG_ERR) { + error_msg("An error occurred while setting a signal handler.\n"); + leave(EXIT_FAILURE); + } + + /* To exit from h5watch for SIGINT signal */ + if(HDsignal(SIGINT, catch_signal) == SIG_ERR) { + error_msg("An error occurred while setting a signal handler.\n"); + leave(EXIT_FAILURE); + } + + /* parse command line options */ + parse_command_line(argc, argv); + + if(argc <= opt_ind) { + error_msg("missing dataset name\n"); + usage(h5tools_getprogname()); + leave(EXIT_FAILURE); + } + + /* Mostly copied from tools/h5ls coding & modified accordingly */ + /* + * [OBJECT] is specified as + * [<filename>/<path_to_dataset>/<dsetname>] + * + * Example: ../dir1/foo/bar/dset + * \_________/\______/ + * file obj + * + * The dichotomy is determined by calling H5Fopen() repeatedly until it + * succeeds. The first call uses the entire name and each subsequent call + * chops off the last component. If we reach the beginning of the name + * then there must have been something wrong with the file (perhaps it + * doesn't exist). + */ + if((fname = HDstrdup(argv[opt_ind])) == NULL) { + error_msg("memory allocation failed (file %s:line %d)\n", + __FILE__, __LINE__); + h5tools_setstatus(EXIT_FAILURE); + } + + /* Create a copy of file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) + return -1; + + /* Set to use the latest library format */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + return -1; + + do { + while(fname && *fname) { + fid = h5tools_fopen(fname, H5F_ACC_RDONLY|H5F_ACC_SWMR_READ, fapl, NULL, drivername, sizeof drivername); + + if(fid >= 0) { + HDfprintf(stdout, "Opened \"%s\" with %s driver.\n", fname, drivername); + break; /*success*/ + } /* end if */ + + /* Shorten the file name; lengthen the object name */ + x = dname; + dname = HDstrrchr(fname, '/'); + if(x) + *x = '/'; + if(!dname) + break; + *dname = '\0'; + } /* end while */ + /* Try opening the file again if somehow unstable */ + } while(g_retry-- > 0 && fid == FAIL); + + if(fid < 0) { + error_msg("unable to open file \"%s\"\n", fname); + if(fname) HDfree(fname); + if(fapl >= 0) H5Pclose(fapl); + leave(EXIT_FAILURE); + } + + if(!dname) { + error_msg("no dataset specified\n"); + h5tools_setstatus(EXIT_FAILURE); + } else { + *dname = '/'; + x = dname; + if((dname = HDstrdup(dname)) == NULL) { + error_msg("memory allocation failed (file %s:line %d)\n", + __FILE__, __LINE__); + h5tools_setstatus(EXIT_FAILURE); + } else { + *x = '\0'; + /* Validate dataset */ + if(check_dataset(fid, dname) < 0) + h5tools_setstatus(EXIT_FAILURE); + /* Validate input "fields" */ + else if(g_list_of_fields && *g_list_of_fields) + if(process_cmpd_fields(fid, dname) < 0) + h5tools_setstatus(EXIT_FAILURE); + } + } + + /* If everything is fine, start monitoring the datset */ + if(h5tools_getstatus() != EXIT_FAILURE) + if(monitor_dataset(fid, dname) < 0) + h5tools_setstatus(EXIT_FAILURE); + + /* Free spaces */ + if(fname) HDfree(fname); + if(dname) HDfree(dname); + if(g_list_of_fields) HDfree(g_list_of_fields); + if(g_listv) { + H5LD_clean_vector(g_listv); + HDfree(g_listv); + } + if(g_dup_fields) HDfree(g_dup_fields); + + /* Close the file access property list */ + if(fapl >= 0 && H5Pclose(fapl) < 0) { + error_msg("unable to close file access property list\n"); + h5tools_setstatus(EXIT_FAILURE); + } + + /* Close the file */ + if(H5Fclose(fid) < 0) { + error_msg("unable to close file\n"); + h5tools_setstatus(EXIT_FAILURE); + } + + H5Eset_auto2(H5E_DEFAULT, func, edata); + /* exit */ + leave(h5tools_getstatus()); +} /* main() */ + diff --git a/hl/tools/h5watch/h5watchgentest.c b/hl/tools/h5watch/h5watchgentest.c new file mode 100644 index 0000000..c5b76de --- /dev/null +++ b/hl/tools/h5watch/h5watchgentest.c @@ -0,0 +1,348 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +#include "hdf5.h" +#include "H5HLprivate2.h" + +/* + * WATCH.h5: file with various types of datasets for testing-- + * + * The following datasets are chunked, H5D_ALLOC_TIME_INCR, max. dimensional setting: + * DSET_ONE: one-dimensional dataset + * DSET_TWO: two-dimensional dataset + * DSET_CMPD: one-dimensional dataset with compound type + * DSET_CMPD_ESC: one-dimensional dataset with compound type and member names with + * escape/separator characters + * DSET_CMPD_TWO: two-dimensional dataset with compound type + * + * The following datasets are one-dimensional, chunked, max. dimension setting: + * DSET_ALLOC_EARLY: dataset with H5D_ALLOC_TIME_EARLY + * DSET_ALLOC_LATE: dataset H5D_ALLOC_TIME_LATE + * + * The following datasets are one-dimensional: + * DSET_NONE: fixed dimension setting, contiguous, H5D_ALLOC_TIME_LATE + * DSET_NOMAX: fixed dimension setting, chunked, H5D_ALLOC_TIME_INCR + */ +#define ONE_DIMS0 10 +#define MAX_ONE_DIMS0 100 + +#define DSET_ONE "DSET_ONE" +#define DSET_NONE "DSET_NONE" +#define DSET_NOMAX "DSET_NOMAX" +#define DSET_ALLOC_LATE "DSET_ALLOC_LATE" +#define DSET_ALLOC_EARLY "DSET_ALLOC_EARLY" +#define DSET_CMPD "DSET_CMPD" +#define DSET_CMPD_ESC "DSET_CMPD_ESC" + +#define TWO_DIMS0 4 +#define TWO_DIMS1 10 +#define MAX_TWO_DIMS0 60 +#define MAX_TWO_DIMS1 100 + +#define DSET_TWO "DSET_TWO" +#define DSET_CMPD_TWO "DSET_CMPD_TWO" + +#define CHUNK_SIZE 2 + +#define FILE "WATCH.h5" + +/* Data structures for datasets with compound types */ +typedef struct sub22_t { + unsigned int a; + unsigned int b; + unsigned int c; +} sub22_t; + +typedef struct sub2_t { + unsigned int a; + sub22_t b; + unsigned int c; +} sub2_t; + +typedef struct sub4_t { + unsigned int a; + unsigned int b; +} sub4_t; + +typedef struct set_t { + unsigned int field1; + sub2_t field2; + double field3; + sub4_t field4; +} set_t; + +/* + ************************************************************************************** + * + * Create a dataset with the given input parameters + * Write to the dataset with the given "data" + * + ************************************************************************************** + */ +static herr_t +generate_dset(hid_t fid, const char *dname, int ndims, hsize_t *dims, hsize_t *maxdims, hid_t dtid, void *data) +{ + hid_t dcpl=-1; /* Dataset creation property */ + hid_t did=-1; /* Dataset id */ + hid_t sid=-1; /* Dataspace id */ + int i; /* Local index variable */ + hsize_t chunk_dims[H5S_MAX_RANK]; /* Dimension sizes for chunks */ + + /* Create the dataspace */ + if((sid = H5Screate_simple(ndims, dims, maxdims)) < 0) + goto done; + + /* Set up dataset's creation properties */ + if(!HDstrcmp(dname, DSET_NONE)) + dcpl = H5P_DEFAULT; + else { + if((dcpl = H5Pcreate(H5P_DATASET_CREATE)) < 0) + goto done; + for(i = 0; i < ndims; i++) + chunk_dims[i] = CHUNK_SIZE; + if(H5Pset_chunk(dcpl, ndims, chunk_dims) < 0) + goto done; + } /* end else */ + + if(!HDstrcmp(dname, DSET_ALLOC_LATE)) { + if(H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_LATE) < 0) + goto done; + } else if(!HDstrcmp(dname, DSET_ALLOC_EARLY)) { + if(H5Pset_alloc_time(dcpl, H5D_ALLOC_TIME_EARLY) < 0) + goto done; + } /* end if-else */ + + /* Create the dataset */ + if((did = H5Dcreate2(fid, dname, dtid, sid, H5P_DEFAULT, dcpl, H5P_DEFAULT)) < 0) + goto done; + + /* Write to the dataset */ + if(H5Dwrite(did, dtid, H5S_ALL, H5S_ALL, H5P_DEFAULT, data) < 0) + goto done; + + /* Closing */ + if(H5Pclose(dcpl) < 0) goto done; + if(H5Sclose(sid) < 0) goto done; + if(H5Dclose(did) < 0) goto done; + + return SUCCEED; + +done: + H5E_BEGIN_TRY + H5Sclose(sid); + H5Pclose(dcpl); + H5Dclose(did); + H5E_END_TRY + + return FAIL; +} /* end generate_dset() */ + +int +main(void) +{ + hid_t fid=-1; /* File id */ + hid_t fapl=-1; /* File access property list id */ + hsize_t cur_dims[1]; /* Dimension sizes */ + hsize_t max_dims[1]; /* Maximum dimension sizes */ + hsize_t cur2_dims[2]; /* Current dimension sizes */ + hsize_t max2_dims[2]; /* Maximum dimension sizes */ + hid_t set_tid=-1, esc_set_tid=-1; /* Compound type id */ + hid_t sub22_tid=-1; /* Compound type id */ + hid_t sub2_tid=-1, esc_sub2_tid=-1; /* Compound type id */ + hid_t sub4_tid=-1, esc_sub4_tid=-1; /* Compound type id */ + int one_data[ONE_DIMS0]; /* Buffer for data */ + int two_data[TWO_DIMS0*TWO_DIMS1]; /* Buffer for data */ + set_t one_cbuf[ONE_DIMS0]; /* Buffer for data with compound type */ + set_t two_cbuf[TWO_DIMS0*TWO_DIMS1]; /* Buffer for data with compound type */ + int i; /* Local index variable */ + + /* Create a copy of file access property list */ + if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0) + HDexit(EXIT_FAILURE); + /* Set to use the latest library format */ + if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0) + HDexit(EXIT_FAILURE); + + /* Create a file with the latest format */ + if((fid = H5Fcreate(FILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl)) < 0) + HDexit(EXIT_FAILURE); + + /* Initialization for one-dimensional dataset */ + cur_dims[0] = ONE_DIMS0; + max_dims[0] = MAX_ONE_DIMS0; + for(i = 0; i < ONE_DIMS0; i++) + one_data[i] = i; + + /* Generate DSET_ONE, DSET_NONE, DSET_NOMAX, DSET_ALLOC_LATE, DSET_EARLY */ + if(generate_dset(fid, DSET_ONE, 1, cur_dims, max_dims, H5T_NATIVE_INT, one_data) < 0) + goto done; + if(generate_dset(fid, DSET_NONE, 1, cur_dims, NULL, H5T_NATIVE_INT, one_data) < 0) + goto done; + if(generate_dset(fid, DSET_NOMAX, 1, cur_dims, NULL, H5T_NATIVE_INT, one_data) < 0) + goto done; + if(generate_dset(fid, DSET_ALLOC_LATE, 1, cur_dims, max_dims, H5T_NATIVE_INT, one_data) < 0) + goto done; + if(generate_dset(fid, DSET_ALLOC_EARLY, 1, cur_dims, max_dims, H5T_NATIVE_INT, one_data) < 0) + goto done; + + /* Initialization for two-dimensional dataset */ + cur2_dims[0] = TWO_DIMS0; + cur2_dims[1] = TWO_DIMS1; + max2_dims[0] = MAX_TWO_DIMS0; + max2_dims[1] = MAX_TWO_DIMS1; + + for(i = 0; i < (TWO_DIMS0 * TWO_DIMS1); i++) + two_data[i] = i; + + /* Generate DSET_TWO */ + if(generate_dset(fid, DSET_TWO, 2, cur2_dims, max2_dims, H5T_NATIVE_INT, two_data) < 0) + goto done; + + /* Initialization for one-dimensional compound typed dataset */ + cur_dims[0] = ONE_DIMS0; + max_dims[0] = MAX_ONE_DIMS0; + + for(i = 0; i < ONE_DIMS0; i++) { + one_cbuf[i].field1 = 1; + one_cbuf[i].field2.a = 2; + one_cbuf[i].field2.c = 4; + one_cbuf[i].field2.b.a = 20; + one_cbuf[i].field2.b.b = 40; + one_cbuf[i].field2.b.c = 80; + one_cbuf[i].field3 = 3.0F; + one_cbuf[i].field4.a = 4; + one_cbuf[i].field4.b = 8; + } /* end for */ + + /* Create the compound type */ + if((sub22_tid = H5Tcreate(H5T_COMPOUND, sizeof(sub22_t))) < 0) + goto done; + if(H5Tinsert(sub22_tid, "a", HOFFSET(sub22_t, a), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(sub22_tid, "b", HOFFSET(sub22_t, b), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(sub22_tid, "c", HOFFSET(sub22_t, c), H5T_NATIVE_INT) < 0) + goto done; + + if((sub2_tid = H5Tcreate(H5T_COMPOUND, sizeof(sub2_t))) < 0) + goto done; + if(H5Tinsert(sub2_tid, "a", HOFFSET(sub2_t, a), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(sub2_tid, "b", HOFFSET(sub2_t, b), sub22_tid) < 0) + goto done; + if(H5Tinsert(sub2_tid, "c", HOFFSET(sub2_t, c), H5T_NATIVE_INT) < 0) + goto done; + + if((sub4_tid = H5Tcreate(H5T_COMPOUND, sizeof(sub4_t))) < 0) + goto done; + if(H5Tinsert(sub4_tid, "a", HOFFSET(sub4_t, a), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(sub4_tid, "b", HOFFSET(sub4_t, b), H5T_NATIVE_INT) < 0) + goto done; + + if((set_tid = H5Tcreate(H5T_COMPOUND, sizeof(set_t))) < 0) + goto done; + if(H5Tinsert(set_tid, "field1", HOFFSET(set_t, field1), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(set_tid, "field2", HOFFSET(set_t, field2), sub2_tid) < 0) + goto done; + if(H5Tinsert(set_tid, "field3", HOFFSET(set_t, field3), H5T_NATIVE_DOUBLE) < 0) + goto done; + if(H5Tinsert(set_tid, "field4", HOFFSET(set_t, field4), sub4_tid) < 0) + goto done; + + /* Create the compound type with escape/separator characters */ + if((esc_sub2_tid = H5Tcreate(H5T_COMPOUND, sizeof(sub2_t))) < 0) + goto done; + if(H5Tinsert(esc_sub2_tid, ".a", HOFFSET(sub2_t, a), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(esc_sub2_tid, ",b", HOFFSET(sub2_t, b), sub22_tid) < 0) + goto done; + if(H5Tinsert(esc_sub2_tid, "\\K", HOFFSET(sub2_t, c), H5T_NATIVE_INT) < 0) + goto done; + + if((esc_sub4_tid = H5Tcreate(H5T_COMPOUND, sizeof(sub4_t))) < 0) + goto done; + if(H5Tinsert(esc_sub4_tid, "a.", HOFFSET(sub4_t, a), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(esc_sub4_tid, "b,", HOFFSET(sub4_t, b), H5T_NATIVE_INT) < 0) + goto done; + + if((esc_set_tid = H5Tcreate(H5T_COMPOUND, sizeof(set_t))) < 0) + goto done; + if(H5Tinsert(esc_set_tid, "field,1", HOFFSET(set_t, field1), H5T_NATIVE_INT) < 0) + goto done; + if(H5Tinsert(esc_set_tid, "field2.", HOFFSET(set_t, field2), esc_sub2_tid) < 0) + goto done; + if(H5Tinsert(esc_set_tid, "field\\3", HOFFSET(set_t, field3), H5T_NATIVE_DOUBLE) < 0) + goto done; + if(H5Tinsert(esc_set_tid, "field4,", HOFFSET(set_t, field4), esc_sub4_tid) < 0) + goto done; + + /* Generate DSET_CMPD, DSET_CMPD_ESC */ + if(generate_dset(fid, DSET_CMPD, 1, cur_dims, max_dims, set_tid, one_cbuf) < 0) + goto done; + if(generate_dset(fid, DSET_CMPD_ESC, 1, cur_dims, max_dims, esc_set_tid, one_cbuf) < 0) + goto done; + + /* Initialization for two-dimensional compound typed dataset */ + cur2_dims[0] = TWO_DIMS0; + cur2_dims[1] = TWO_DIMS1; + max2_dims[0] = MAX_TWO_DIMS0; + max2_dims[0] = MAX_TWO_DIMS1; + + for(i = 0; i < (TWO_DIMS0 * TWO_DIMS1); i++) { + two_cbuf[i].field1 = 1; + two_cbuf[i].field2.a = 2; + two_cbuf[i].field2.c = 4; + two_cbuf[i].field2.b.a = 20; + two_cbuf[i].field2.b.b = 40; + two_cbuf[i].field2.b.c = 80; + two_cbuf[i].field3 = 3.0F; + two_cbuf[i].field4.a = 4; + two_cbuf[i].field4.b = 8; + } /* end for */ + + /* Generate DSET_CMPD_TWO */ + if(generate_dset(fid, DSET_CMPD_TWO, 2, cur2_dims, max2_dims, set_tid, two_cbuf) < 0) + goto done; + + /* Closing */ + if(H5Tclose(sub22_tid) < 0) goto done; + if(H5Tclose(sub2_tid) < 0) goto done; + if(H5Tclose(sub4_tid) < 0) goto done; + if(H5Tclose(set_tid) < 0) goto done; + if(H5Tclose(esc_sub2_tid) < 0) goto done; + if(H5Tclose(esc_sub4_tid) < 0) goto done; + if(H5Tclose(esc_set_tid) < 0) goto done; + if(H5Pclose(fapl) < 0) goto done; + if(H5Fclose(fid) < 0) goto done; + + HDexit(EXIT_SUCCESS); + +done: + H5E_BEGIN_TRY + H5Tclose(sub22_tid); + H5Tclose(sub2_tid); + H5Tclose(sub4_tid); + H5Tclose(set_tid); + H5Tclose(esc_sub2_tid); + H5Tclose(esc_sub4_tid); + H5Tclose(esc_set_tid); + H5Pclose(fapl); + H5Fclose(fid); + H5E_END_TRY + + HDexit(EXIT_FAILURE); +} /* end main() */ + diff --git a/hl/tools/h5watch/swmr_check_compat_vfd.c b/hl/tools/h5watch/swmr_check_compat_vfd.c new file mode 100644 index 0000000..7d11a73 --- /dev/null +++ b/hl/tools/h5watch/swmr_check_compat_vfd.c @@ -0,0 +1,57 @@ +/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * + * Copyright by The HDF Group. * + * Copyright by the Board of Trustees of the University of Illinois. * + * All rights reserved. * + * * + * This file is part of HDF5. The full HDF5 copyright notice, including * + * terms governing use, modification, and redistribution, is contained in * + * the COPYING file, which can be found at the root of the source code * + * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. * + * If you do not have access to either file, you may request a copy from * + * help@hdfgroup.org. * + * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */ + +/* Purpose: This is a small program that checks if the HDF5_DRIVER + * environment variable is set to a value that supports SWMR. + * + * It is intended for use in shell scripts. + */ + +#include <stdlib.h> + +#include "H5private.h" + +/* This file needs to access the file driver testing code */ +#define H5FD_FRIEND /*suppress error about including H5FDpkg */ +#define H5FD_TESTING +#include "H5FDpkg.h" /* File drivers */ + + +/*------------------------------------------------------------------------- + * Function: main + * + * Purpose: Inspects the HDF5_DRIVER environment variable, which + * determines the VFD that the test harness will use with + * the majority of the tests. + * + * Return: VFD supports SWMR: EXIT_SUCCESS + * + * VFD does not support SWMR + * or failure: EXIT_FAILURE + * + *------------------------------------------------------------------------- + */ +int +main(void) +{ + char *driver = NULL; + + driver = HDgetenv("HDF5_DRIVER"); + + if(H5FD_supports_swmr_test(driver)) + return EXIT_SUCCESS; + else + return EXIT_FAILURE; + +} /* end main() */ + diff --git a/hl/tools/h5watch/testh5watch.sh.in b/hl/tools/h5watch/testh5watch.sh.in new file mode 100644 index 0000000..05e66bf --- /dev/null +++ b/hl/tools/h5watch/testh5watch.sh.in @@ -0,0 +1,408 @@ +#! /bin/sh +# +# Copyright by The HDF Group. +# Copyright by the Board of Trustees of the University of Illinois. +# All rights reserved. +# +# This file is part of HDF5. The full HDF5 copyright notice, including +# terms governing use, modification, and redistribution, is contained in +# the COPYING file, which can be found at the root of the source code +# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases. +# If you do not have access to either file, you may request a copy from +# help@hdfgroup.org. +# +# Tests for the h5watch tool +# + +# Check to see if the VFD specified by the HDF5_DRIVER environment variable +# supports SWMR. +./swmr_check_compat_vfd +rc=$? +if [[ $rc != 0 ]] ; then + echo + echo "The VFD specified by the HDF5_DRIVER environment variable" + echo "does not support SWMR." + echo + echo "h5watch tests skipped" + echo + exit 0 +fi + +#echo "h5watch tests are skipped temporarily." +#echo +#exit 0 + +H5WATCH=h5watch # The tool name +H5WATCH_BIN=`pwd`/$H5WATCH # The path of H5WATCH +EXTEND_DSET=extend_dset # Routine to extend the dataset when watching +EXTEND_BIN=`pwd`/$EXTEND_DSET # The path of EXTEND_DSET +# +EXIT_SUCCESS=0 +EXIT_FAILURE=1 +# +GEN_TEST=h5watchgentest # Generate HDF5 file with various datasets +GEN_TEST_BIN=`pwd`/$GEN_TEST # Path of the binary GEN_TEST +WATCHFILE=`pwd`/WATCH.h5 # The HDF5 file generated to test h5watch +TESTFILE=TEST.h5 # The temporary file (a copy of WATCH.h5) used by tests +TRY_MAX=10 # Try running the test again +# +# These 3 defines should be the same as the defines in ./extend_dset.c +WRITER_MESSAGE=writer_message # The message file created by the "extend" process +READER_MESSAGE=reader_message # The message file created by the "watch" process +MESSAGE_TIMEOUT=300 # Message timeout length in secs +# +CMP='cmp -s' +DIFF='diff -c' +NLINES=20 # Max. lines of output to display if test fails +# +# Mac OS: just to make sure echo "backslash backslash" behaves properly +if test `uname -s` = 'Darwin'; then + ECHO='/bin/echo' +else + ECHO='echo' +fi +# +# Global variables +nerrors=0 +verbose=yes + +# The build (current) directory might be different than the source directory. +if test -z "$srcdir"; then + srcdir=. +fi +test -d ../testfiles || mkdir ../testfiles + +# Print a line-line message left justified in a field of 70 characters +# beginning with the word "Testing". +TESTING() { + SPACES=" " + $ECHO "Testing $* $SPACES" |cut -c1-70 |tr -d '\012' +} + +# +# Overall algorithm: +# +# Run a test and print PASSED or FAILED +# If a test did not return with the expected return code, +# increment the `nerrors' global variable and (if $verbose is set) display up to $NLINES +# lines of the actual output from the test. +# If the test did return the expected code, +# compare the actual output with the expected output; +# If the outputs are the same, print PASSED, +# Otherwise print FAILED and the difference between the two outputs. +# The output files are not removed if $HDF5_NOCLEANUP has a non-zero value. +# +# +# TOOLTEST(): +# +# Arguments: +# +# $1 -- expected output +# $2 -- expected return code +# $3 and on -- arguments for h5watch +TOOLTEST() { + expect="$srcdir/../testfiles/$1" + actual="../testfiles/`basename $1 .ddl`.out" + actual_err="../testfiles/`basename $1 .ddl`.err" + shift + retvalexpect=$1 + shift + # Run test. + # Stderr is included in stdout so that the diff can detect + # any unexpected output from that stream too. + TESTING $H5WATCH $@ + ( + $RUNSERIAL $H5WATCH_BIN "$@" + ) > $actual 2>$actual_err + exitcode=$? + cat $actual_err >> $actual + if [ $exitcode -ne $retvalexpect ]; then + $ECHO "*FAILED*" + nerrors="`expr $nerrors + 1`" + if [ yes = "$verbose" ]; then + $ECHO "test returned with exit code $exitcode" + $ECHO "test output: (up to $NLINES lines)" + head -$NLINES $actual + $ECHO "***end of test output***" + $ECHO "" + fi + elif $CMP $expect $actual; then + $ECHO " PASSED" + else + $ECHO "*FAILED*" + $ECHO " Expected result differs from actual result" + nerrors="`expr $nerrors + 1`" + test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /' + fi + + # Clean up output file + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual $actual_err + fi +} + +# +# +# +# TEST_WATCH(): +# +# Arguments: +# $1 -- the specified dataset to watch and to extend +# $2 -- the options to h5watch (can be NULL) +# $3 -- expected output from watching the object +# $4 -- action 1 +# $5 -- action 2 +# +TEST_WATCH() { +try=0 +while [ $try -lt $TRY_MAX ] ; +do + cp $WATCHFILE $TESTFILE # Copy the file being watched/extended to a temporary file + actual="../testfiles/`basename $3 .ddl`.out" # The actual output + expect="$srcdir/../testfiles/$3" # The expected output + # + # Set up options and object to h5watch + if test -z "$2"; then + OBJ="$TESTFILE/$1" # Empty options, just object to h5watch + else + OBJ="$2 $TESTFILE/$1" # Options + object to h5watch + fi + rm -f $WRITER_MESSAGE # Remove the file just to be sure + rm -f $READER_MESSAGE # Remove the file just to be sure + # + $EXTEND_BIN $TESTFILE $1 $4 $5& # Extend the dataset; put in background + extend_pid=$! # Get "extend" process ID + # + # Wait for message from "extend_dset" process to start h5watch-- + # To wait for the writer message file or till the maximum # of seconds is reached + # This performs similar function as the routine h5_wait_message() in test/h5test.c + mexist=0 # Indicate whether the message file is found + t0=`date +%s` # Get current time in seconds + difft=0 # Initialize the time difference + while [ $difft -lt $MESSAGE_TIMEOUT ] ; # Loop till message times out + do + t1=`date +%s` # Get current time in seconds + difft=`expr $t1 - $t0` # Calculate the time difference + if [ -e $WRITER_MESSAGE ]; then # If message file is found: + mexist=1 # indicate the message file is found + rm $WRITER_MESSAGE # remove the message file + break # get out of the while loop + fi + done; + # + # If message file from "extend" process is found-- + # start h5watch + # send message to "extend" process to start work + # wait for "extend" process to complete, then kill h5watch + # determine test result + # If message file from "extend" process is not found-- + # there is some problem; the test fails + # + if test $mexist -eq 0; then + $ECHO "*FAILED*" + $ECHO "Problem with extend_dset...this test failed." + else + # + # Run h5watch; put in background; collect output to a file + TESTING $H5WATCH $OBJ + $RUNSERIAL $H5WATCH_BIN $2 "$TESTFILE/$1" >> $actual & + watch_pid=$! # Get h5watch process ID + cp /dev/null $READER_MESSAGE # Send message to "extend" process to start work + wait $extend_pid # Wait for "extend" process to complete + extend_exit=$? # Collect "extend" process' exit code + sleep 1 # Sleep to make sure output is flushed + kill $watch_pid # Kill h5watch + wait $watch_pid # Wait for "h5watch" process to complete + # + if [ $extend_exit -ne 0 ]; then # Error returned from "extend" process + $ECHO "*FAILED*" + nerrors="`expr $nerrors + 1`" + if [ yes = "$verbose" ]; then + $ECHO "extend test returned with exit code $extend_exit" + $ECHO "test output: (up to $NLINES lines)" + head -$NLINES $actual + $ECHO "***end of test output***" + $ECHO "" + fi + elif $CMP $expect $actual; then # Compare actual output with expected output + try=$TRY_MAX + $ECHO " PASSED" + else + try="`expr $try + 1`" + if [ $try -lt $TRY_MAX ]; then + $ECHO "*RETRY" + rm -f $actual + rm -f $TESTFILE + else + $ECHO "*FAILED*" # Actual and expected outputs are different + $ECHO " Expected result differs from actual result" + nerrors="`expr $nerrors + 1`" + if test yes = "$verbose"; then + $DIFF $expect $actual |sed 's/^/ /' + fi + fi + fi + # + # Cleaning + rm -f $TESTFILE + if test -z "$HDF5_NOCLEANUP"; then + rm -f $actual + fi + fi +done; +} +############################################################################## +############################################################################## +### T H E T E S T S ### +############################################################################## +############################################################################## +# +# +################################################################################################# +# # +# WATCH.h5: file with various types of datasets for testing-- # +# The following datasets are chunked, H5D_ALLOC_TIME_INCR, max. dimensional setting: # +# DSET_ONE: one-dimensional dataset # +# DSET_TWO: two-dimensional dataset # +# DSET_CMPD: one-dimensional dataset with compound type # +# DSET_CMPD_ESC: one-dimensional dataset with compound type & escape/separator characters # +# DSET_CMPD_TWO: two-dimensional dataset with compound type # +# # +# The following datasets are one-dimensional, chunked, max. dimension setting: # +# DSET_ALLOC_EARLY: dataset with H5D_ALLOC_TIME_EARLY # +# DSET_ALLOC_LATE: dataset H5D_ALLOC_TIME_LATE # +# # +# The following datasets are one-dimensional: # +# DSET_NONE: fixed dimension setting, contiguous, H5D_ALLOC_TIME_LATE # +# DSET_NOMAX: fixed dimension setting, chunked, H5D_ALLOC_TIME_INCR # +# # +################################################################################################# +# +# +################################################################################################# +# # +# Tests on expected failures: # +# Invalid file name # +# Unable to find dataset, invalid dataset # +# DSET_NONE and DSET_NOMAX # +# Invalid input to options --width and --polling # +# Invalid field names for -f option # +# # +################################################################################################# +# +# Generate file with various types of datasets +$GEN_TEST_BIN +# Test on --help options +TOOLTEST w-help1.ddl 0 --help +# +# Tests on expected failures +TOOLTEST w-err-dset1.ddl 1 WATCH.h5 +TOOLTEST w-err-dset2.ddl 1 WATCH.h5/group/DSET_CMPD +TOOLTEST w-err-dset-none.ddl 1 WATCH.h5/DSET_NONE +TOOLTEST w-err-dset-nomax.ddl 1 WATCH.h5/DSET_NOMAX +TOOLTEST w-err-file.ddl 1 ../WATCH.h5/DSET_CMPD +TOOLTEST w-err-width.ddl 1 --width=-8 WATCH.h5/DSET_ONE +TOOLTEST w-err-poll.ddl 1 --polling=-8 WATCH.h5/DSET_ONE +TOOLTEST w-err-poll0.ddl 1 --polling=0 WATCH.h5/DSET_ONE +# +# Tests on invalid field names via --fields option for a compound typed dataset: DSET_CMPD +TOOLTEST w-err-cmpd1.ddl 1 --fields=fieldx WATCH.h5/DSET_CMPD +TOOLTEST w-err-cmpd2.ddl 1 --fields=field1,field2. WATCH.h5/DSET_CMPD +TOOLTEST w-err-cmpd3.ddl 1 --fields=field1,field2, WATCH.h5/DSET_CMPD +TOOLTEST w-err-cmpd4.ddl 1 --fields=field1,field2.b.k WATCH.h5/DSET_CMPD +TOOLTEST w-err-cmpd5.ddl 1 --fields=field1 --fields=field2.b.k WATCH.h5/DSET_CMPD +# +echo "DONE WITH 1st SET OF TESTS" +# +# +# +################################# +# Tests without options # +################################# +# +# Generate file WATCH.h5 with various types of datasets, +$GEN_TEST_BIN +# +# Watching and extending: (TEST.h5 is a copy of WATCH.h5) +# TEST.h5/DSET_ONE +# TEST.h5/DSET_ALLOC_EARLY +# TEST.h5/DSET_ALLOC_LATE +# TEST.h5/DSET_CMPD +# TEST.h5/DSET_TWO +# TEST.h5/DSET_CMPD_TWO +# TEST.h5/DSET_CMPD_ESC +# +TEST_WATCH DSET_ONE '' w-ext-one.ddl 3 0 #Increase +TEST_WATCH DSET_ALLOC_EARLY '' w-ext-early.ddl -1 0 #Decrease +TEST_WATCH DSET_ALLOC_LATE '' w-ext-late.ddl 0 0 #Same +TEST_WATCH DSET_CMPD '' w-ext-cmpd.ddl 3 0 #Increase +TEST_WATCH DSET_CMPD_ESC '' w-ext-cmpd-esc.ddl -1 0 #Decrease +TEST_WATCH DSET_TWO '' w-ext-two.ddl 2 2 #Increase, Increase +TEST_WATCH DSET_CMPD_TWO '' w-ext-cmpd-two.ddl 2 -9 #Increase, Decrease +# +echo "DONE WITH 2nd SET OF TESTS" +# +# +# +################################# +# Tests on --fields option # +################################# +# +# Watching and extending: (TEST.h5 is a copy of WATCH.h5) +# TEST.h5/DSET_CMPD with --fields=field1,field2 +# TEST.h5/DSET_CMPD with --fields=field2.b,field4 +# TEST.h5/DSET_CMPD with --fields=field2.b.a --fields=field2.c +TEST_WATCH DSET_CMPD --fields=field1,field2 w-ext-cmpd-f1.ddl -9 0 #Decrease +TEST_WATCH DSET_CMPD --fields=field2.b,field4 w-ext-cmpd-f2.ddl 3 0 #Increase +TEST_WATCH DSET_CMPD '--fields=field2.b.a --fields=field2.c' w-ext-cmpd-ff3.ddl 0 0 #Same +# +# +# TEST.h5/DSET_CMP_TWO with --fields=field1,field2 +# TEST.h5/DSET_CMPD_TWO with --fields=field2.b --fields=field4 +# TEST.h5/DSET_CMPD_TWO with --fields=field2.b.a,field2.c +TEST_WATCH DSET_CMPD_TWO --fields=field1,field2 w-ext-cmpd-two-f1.ddl 2 0 #Increase, Same +TEST_WATCH DSET_CMPD_TWO '--fields=field2.b --fields=field4' w-ext-cmpd-two-ff2.ddl -1 2 #Decrease, Increase +TEST_WATCH DSET_CMPD_TWO --fields=field2.b.a,field2.c w-ext-cmpd-two-f3.ddl -1 -3 #Decrease, Decrease +# +# +# TEST.h5/DSET_CMPD_ESC with --fields=field\,1,field2\. +# TEST.h5/DSET_CMPD_ESC with --fields=field2\..\,b --fields=field4\, +# TEST.h5/DSET_CMPD_ESC with --fields=field2\..\,b.a,field2\..\\K +TEST_WATCH DSET_CMPD_ESC '--fields=field\,1,field2\.' w-ext-cmpd-esc-f1.ddl 3 0 #Increase +TEST_WATCH DSET_CMPD_ESC '--fields=field2\..\,b --fields=field4\,' w-ext-cmpd-esc-ff2.ddl -1 0 #Decrease +TEST_WATCH DSET_CMPD_ESC '--fields=field2\..\,b.a,field2\..\\K' w-ext-cmpd-esc-f3.ddl 3 0 #Increase +# +# +echo "DONE WITH 3rd SET OF TESTS" +# +# +# +################################################# +# Tests on options: # +# --dim # +# --width, --label, --simple, --help # +################################################# +# +# Watching and extending: (TEST.h5 is a copy of WATCH.h5) +# TEST.h5/DSET_ONE with -d option +# TEST.h5/DSET_TWO with --dim option +# TEST.h5/DSET_TWO with --width=60 option +# TEST.h5/DSET_CMPD with --label option +# TEST.h5/DSET_ONE with --simple option +TEST_WATCH DSET_ONE --dim w-ext-one-d.ddl 3 0 #Increase +TEST_WATCH DSET_TWO --dim w-ext-two-d.ddl -2 0 #Decrease, Same +TEST_WATCH DSET_TWO --width=30 w-ext-two-width.ddl 0 2 #Same, Increase +TEST_WATCH DSET_CMPD --label w-ext-cmpd-label.ddl 3 0 #Increase +TEST_WATCH DSET_ONE --simple w-ext-one-simple.ddl 2 0 #I +# +echo "DONE WITH 4th SET OF TESTS" +# +# +# +if test $nerrors -eq 0 ; then + $ECHO "All h5watch tests passed." + exit $EXIT_SUCCESS +else + $ECHO "h5watch tests failed with $nerrors errors." + exit $EXIT_FAILURE +fi diff --git a/hl/tools/testfiles/w-err-cmpd1.ddl b/hl/tools/testfiles/w-err-cmpd1.ddl new file mode 100644 index 0000000..775d6a0 --- /dev/null +++ b/hl/tools/testfiles/w-err-cmpd1.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: error in processing <list_of_fields> diff --git a/hl/tools/testfiles/w-err-cmpd2.ddl b/hl/tools/testfiles/w-err-cmpd2.ddl new file mode 100644 index 0000000..775d6a0 --- /dev/null +++ b/hl/tools/testfiles/w-err-cmpd2.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: error in processing <list_of_fields> diff --git a/hl/tools/testfiles/w-err-cmpd3.ddl b/hl/tools/testfiles/w-err-cmpd3.ddl new file mode 100644 index 0000000..775d6a0 --- /dev/null +++ b/hl/tools/testfiles/w-err-cmpd3.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: error in processing <list_of_fields> diff --git a/hl/tools/testfiles/w-err-cmpd4.ddl b/hl/tools/testfiles/w-err-cmpd4.ddl new file mode 100644 index 0000000..775d6a0 --- /dev/null +++ b/hl/tools/testfiles/w-err-cmpd4.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: error in processing <list_of_fields> diff --git a/hl/tools/testfiles/w-err-cmpd5.ddl b/hl/tools/testfiles/w-err-cmpd5.ddl new file mode 100644 index 0000000..775d6a0 --- /dev/null +++ b/hl/tools/testfiles/w-err-cmpd5.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: error in processing <list_of_fields> diff --git a/hl/tools/testfiles/w-err-dset-nomax.ddl b/hl/tools/testfiles/w-err-dset-nomax.ddl new file mode 100644 index 0000000..b99cf84 --- /dev/null +++ b/hl/tools/testfiles/w-err-dset-nomax.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: "/DSET_NOMAX" should have unlimited or max. dimension setting diff --git a/hl/tools/testfiles/w-err-dset-none.ddl b/hl/tools/testfiles/w-err-dset-none.ddl new file mode 100644 index 0000000..cbf6770 --- /dev/null +++ b/hl/tools/testfiles/w-err-dset-none.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: "/DSET_NONE" should be a chunked or virtual dataset diff --git a/hl/tools/testfiles/w-err-dset1.ddl b/hl/tools/testfiles/w-err-dset1.ddl new file mode 100644 index 0000000..433c4d6 --- /dev/null +++ b/hl/tools/testfiles/w-err-dset1.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: no dataset specified diff --git a/hl/tools/testfiles/w-err-dset2.ddl b/hl/tools/testfiles/w-err-dset2.ddl new file mode 100644 index 0000000..81b52de --- /dev/null +++ b/hl/tools/testfiles/w-err-dset2.ddl @@ -0,0 +1,2 @@ +Opened "WATCH.h5" with sec2 driver. +h5watch error: unable to open dataset "/group/DSET_CMPD" diff --git a/hl/tools/testfiles/w-err-file.ddl b/hl/tools/testfiles/w-err-file.ddl new file mode 100644 index 0000000..015661f --- /dev/null +++ b/hl/tools/testfiles/w-err-file.ddl @@ -0,0 +1 @@ +h5watch error: unable to open file "../WATCH.h5/DSET_CMPD" diff --git a/hl/tools/testfiles/w-err-poll.ddl b/hl/tools/testfiles/w-err-poll.ddl new file mode 100644 index 0000000..e6510f2 --- /dev/null +++ b/hl/tools/testfiles/w-err-poll.ddl @@ -0,0 +1,35 @@ +Usage: h5watch [OPTIONS] [OBJECT] + + OPTIONS + --help Print a usage message and exit. + --version Print version number and exit. + --label Label members of compound typed dataset. + --simple Use a machine-readable output format. + --dim Monitor changes in size of dataset dimensions only. + --width=N Set the number of columns to N for output. + A value of 0 sets the number of columns to the + maximum (65535). The default width is 80 columns. + --polling=N Set the polling interval to N (in seconds) when the + dataset will be checked for appended data. The default + polling interval is 1. + --fields=<list_of_fields> + Display data for the fields specified in <list_of_fields> + for a compound data type. <list_of_fields> can be + specified as follows: + 1) A comma-separated list of field names in a + compound data type. "," is the separator + for field names while "." is the separator + for a nested field. + 2) A single field name in a compound data type. + Can use this option multiple times. + Note that backslash is the escape character to avoid + characters in field names that conflict with the tool's + separators. + + OBJECT is specified as [<filename>/<path_to_dataset>/<dsetname>] + <filename> Name of the HDF5 file. It may be preceded by path + separated by slashes to the specified HDF5 file. + <path_to_dataset> Path separated by slashes to the specified dataset + <dsetname> Name of the dataset + + User can end the h5watch process by ctrl-C (SIGINT) or kill the process (SIGTERM). diff --git a/hl/tools/testfiles/w-err-poll0.ddl b/hl/tools/testfiles/w-err-poll0.ddl new file mode 100644 index 0000000..e6510f2 --- /dev/null +++ b/hl/tools/testfiles/w-err-poll0.ddl @@ -0,0 +1,35 @@ +Usage: h5watch [OPTIONS] [OBJECT] + + OPTIONS + --help Print a usage message and exit. + --version Print version number and exit. + --label Label members of compound typed dataset. + --simple Use a machine-readable output format. + --dim Monitor changes in size of dataset dimensions only. + --width=N Set the number of columns to N for output. + A value of 0 sets the number of columns to the + maximum (65535). The default width is 80 columns. + --polling=N Set the polling interval to N (in seconds) when the + dataset will be checked for appended data. The default + polling interval is 1. + --fields=<list_of_fields> + Display data for the fields specified in <list_of_fields> + for a compound data type. <list_of_fields> can be + specified as follows: + 1) A comma-separated list of field names in a + compound data type. "," is the separator + for field names while "." is the separator + for a nested field. + 2) A single field name in a compound data type. + Can use this option multiple times. + Note that backslash is the escape character to avoid + characters in field names that conflict with the tool's + separators. + + OBJECT is specified as [<filename>/<path_to_dataset>/<dsetname>] + <filename> Name of the HDF5 file. It may be preceded by path + separated by slashes to the specified HDF5 file. + <path_to_dataset> Path separated by slashes to the specified dataset + <dsetname> Name of the dataset + + User can end the h5watch process by ctrl-C (SIGINT) or kill the process (SIGTERM). diff --git a/hl/tools/testfiles/w-err-width.ddl b/hl/tools/testfiles/w-err-width.ddl new file mode 100644 index 0000000..e6510f2 --- /dev/null +++ b/hl/tools/testfiles/w-err-width.ddl @@ -0,0 +1,35 @@ +Usage: h5watch [OPTIONS] [OBJECT] + + OPTIONS + --help Print a usage message and exit. + --version Print version number and exit. + --label Label members of compound typed dataset. + --simple Use a machine-readable output format. + --dim Monitor changes in size of dataset dimensions only. + --width=N Set the number of columns to N for output. + A value of 0 sets the number of columns to the + maximum (65535). The default width is 80 columns. + --polling=N Set the polling interval to N (in seconds) when the + dataset will be checked for appended data. The default + polling interval is 1. + --fields=<list_of_fields> + Display data for the fields specified in <list_of_fields> + for a compound data type. <list_of_fields> can be + specified as follows: + 1) A comma-separated list of field names in a + compound data type. "," is the separator + for field names while "." is the separator + for a nested field. + 2) A single field name in a compound data type. + Can use this option multiple times. + Note that backslash is the escape character to avoid + characters in field names that conflict with the tool's + separators. + + OBJECT is specified as [<filename>/<path_to_dataset>/<dsetname>] + <filename> Name of the HDF5 file. It may be preceded by path + separated by slashes to the specified HDF5 file. + <path_to_dataset> Path separated by slashes to the specified dataset + <dsetname> Name of the dataset + + User can end the h5watch process by ctrl-C (SIGINT) or kill the process (SIGTERM). diff --git a/hl/tools/testfiles/w-ext-cmpd-esc-f1.ddl b/hl/tools/testfiles/w-ext-cmpd-esc-f1.ddl new file mode 100644 index 0000000..09255cc --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-esc-f1.ddl @@ -0,0 +1,6 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_ESC... +dimension 0: 10->13 (increases) + Data: + (10) {1, {2, {2, 2, 2}, 2}}, {2, {3, {3, 3, 3}, 3}}, + (12) {3, {4, {4, 4, 4}, 4}} diff --git a/hl/tools/testfiles/w-ext-cmpd-esc-f3.ddl b/hl/tools/testfiles/w-ext-cmpd-esc-f3.ddl new file mode 100644 index 0000000..00ed390 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-esc-f3.ddl @@ -0,0 +1,5 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_ESC... +dimension 0: 10->13 (increases) + Data: + (10) {{{2}}, {2}}, {{{3}}, {3}}, {{{4}}, {4}} diff --git a/hl/tools/testfiles/w-ext-cmpd-esc-ff2.ddl b/hl/tools/testfiles/w-ext-cmpd-esc-ff2.ddl new file mode 100644 index 0000000..9b9a971 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-esc-ff2.ddl @@ -0,0 +1,3 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_ESC... +dimension 0: 10->9 (decreases) diff --git a/hl/tools/testfiles/w-ext-cmpd-esc.ddl b/hl/tools/testfiles/w-ext-cmpd-esc.ddl new file mode 100644 index 0000000..9b9a971 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-esc.ddl @@ -0,0 +1,3 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_ESC... +dimension 0: 10->9 (decreases) diff --git a/hl/tools/testfiles/w-ext-cmpd-f1.ddl b/hl/tools/testfiles/w-ext-cmpd-f1.ddl new file mode 100644 index 0000000..029e4db --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-f1.ddl @@ -0,0 +1,3 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD... +dimension 0: 10->1 (decreases) diff --git a/hl/tools/testfiles/w-ext-cmpd-f2.ddl b/hl/tools/testfiles/w-ext-cmpd-f2.ddl new file mode 100644 index 0000000..362cc94 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-f2.ddl @@ -0,0 +1,6 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD... +dimension 0: 10->13 (increases) + Data: + (10) {{{2, 2, 2}}, {4, 4}}, {{{3, 3, 3}}, {5, 5}}, {{{4, 4, 4}}, {6, + (12) 6}} diff --git a/hl/tools/testfiles/w-ext-cmpd-ff3.ddl b/hl/tools/testfiles/w-ext-cmpd-ff3.ddl new file mode 100644 index 0000000..6a54b97 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-ff3.ddl @@ -0,0 +1,2 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD... diff --git a/hl/tools/testfiles/w-ext-cmpd-label.ddl b/hl/tools/testfiles/w-ext-cmpd-label.ddl new file mode 100644 index 0000000..394d5a6 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-label.ddl @@ -0,0 +1,10 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD... +dimension 0: 10->13 (increases) + Data: + (10) {field1=1, field2={a=2, b={a=2, b=2, c=2}, c=2}, field3=3, + (10) field4={a=4, b=4}}, + (11) {field1=2, field2={a=3, b={a=3, b=3, c=3}, c=3}, field3=4, + (11) field4={a=5, b=5}}, + (12) {field1=3, field2={a=4, b={a=4, b=4, c=4}, c=4}, field3=5, + (12) field4={a=6, b=6}} diff --git a/hl/tools/testfiles/w-ext-cmpd-two-f1.ddl b/hl/tools/testfiles/w-ext-cmpd-two-f1.ddl new file mode 100644 index 0000000..9b4c235 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-two-f1.ddl @@ -0,0 +1,15 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_TWO... +dimension 0: 4->6 (increases) +dimension 1: 10->10 (unchanged) + Data: + (4,0) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (4,2) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (4,4) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (4,6) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (4,8) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (5,0) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (5,2) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (5,4) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (5,6) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}}, + (5,8) {2, {2, {2, 2, 2}, 2}}, {2, {2, {2, 2, 2}, 2}} diff --git a/hl/tools/testfiles/w-ext-cmpd-two-f3.ddl b/hl/tools/testfiles/w-ext-cmpd-two-f3.ddl new file mode 100644 index 0000000..94b5c99 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-two-f3.ddl @@ -0,0 +1,4 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_TWO... +dimension 0: 4->3 (decreases) +dimension 1: 10->7 (decreases) diff --git a/hl/tools/testfiles/w-ext-cmpd-two-ff2.ddl b/hl/tools/testfiles/w-ext-cmpd-two-ff2.ddl new file mode 100644 index 0000000..482da31 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-two-ff2.ddl @@ -0,0 +1,8 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_TWO... +dimension 0: 4->3 (decreases) +dimension 1: 10->12 (increases) + Data: + (0,10) {{{-1, -1, -1}}, {-1, -1}}, {{{-1, -1, -1}}, {-1, -1}} + (1,10) {{{-1, -1, -1}}, {-1, -1}}, {{{-1, -1, -1}}, {-1, -1}} + (2,10) {{{-1, -1, -1}}, {-1, -1}}, {{{-1, -1, -1}}, {-1, -1}} diff --git a/hl/tools/testfiles/w-ext-cmpd-two.ddl b/hl/tools/testfiles/w-ext-cmpd-two.ddl new file mode 100644 index 0000000..57ffc2c --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd-two.ddl @@ -0,0 +1,7 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD_TWO... +dimension 0: 4->6 (increases) +dimension 1: 10->1 (decreases) + Data: + (4,0) {2, {2, {2, 2, 2}, 2}, 2, {2, 2}}, + (5,0) {2, {2, {2, 2, 2}, 2}, 2, {2, 2}} diff --git a/hl/tools/testfiles/w-ext-cmpd.ddl b/hl/tools/testfiles/w-ext-cmpd.ddl new file mode 100644 index 0000000..aac5be3 --- /dev/null +++ b/hl/tools/testfiles/w-ext-cmpd.ddl @@ -0,0 +1,7 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_CMPD... +dimension 0: 10->13 (increases) + Data: + (10) {1, {2, {2, 2, 2}, 2}, 3, {4, 4}}, + (11) {2, {3, {3, 3, 3}, 3}, 4, {5, 5}}, + (12) {3, {4, {4, 4, 4}, 4}, 5, {6, 6}} diff --git a/hl/tools/testfiles/w-ext-early.ddl b/hl/tools/testfiles/w-ext-early.ddl new file mode 100644 index 0000000..bb72104 --- /dev/null +++ b/hl/tools/testfiles/w-ext-early.ddl @@ -0,0 +1,3 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_ALLOC_EARLY... +dimension 0: 10->9 (decreases) diff --git a/hl/tools/testfiles/w-ext-late.ddl b/hl/tools/testfiles/w-ext-late.ddl new file mode 100644 index 0000000..a6f8265 --- /dev/null +++ b/hl/tools/testfiles/w-ext-late.ddl @@ -0,0 +1,2 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_ALLOC_LATE... diff --git a/hl/tools/testfiles/w-ext-one-d.ddl b/hl/tools/testfiles/w-ext-one-d.ddl new file mode 100644 index 0000000..673370a --- /dev/null +++ b/hl/tools/testfiles/w-ext-one-d.ddl @@ -0,0 +1,3 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_ONE... +dimension 0: 10->13 (increases) diff --git a/hl/tools/testfiles/w-ext-one-simple.ddl b/hl/tools/testfiles/w-ext-one-simple.ddl new file mode 100644 index 0000000..5df9dff --- /dev/null +++ b/hl/tools/testfiles/w-ext-one-simple.ddl @@ -0,0 +1,6 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_ONE... +dimension 0: 10->12 (increases) + Data: + 0 + 1 diff --git a/hl/tools/testfiles/w-ext-one.ddl b/hl/tools/testfiles/w-ext-one.ddl new file mode 100644 index 0000000..9604020 --- /dev/null +++ b/hl/tools/testfiles/w-ext-one.ddl @@ -0,0 +1,5 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_ONE... +dimension 0: 10->13 (increases) + Data: + (10) 0, 1, 2 diff --git a/hl/tools/testfiles/w-ext-two-d.ddl b/hl/tools/testfiles/w-ext-two-d.ddl new file mode 100644 index 0000000..5c7af0a --- /dev/null +++ b/hl/tools/testfiles/w-ext-two-d.ddl @@ -0,0 +1,4 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_TWO... +dimension 0: 4->2 (decreases) +dimension 1: 10->10 (unchanged) diff --git a/hl/tools/testfiles/w-ext-two-width.ddl b/hl/tools/testfiles/w-ext-two-width.ddl new file mode 100644 index 0000000..9f09fde --- /dev/null +++ b/hl/tools/testfiles/w-ext-two-width.ddl @@ -0,0 +1,9 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_TWO... +dimension 0: 4->4 (unchanged) +dimension 1: 10->12 (increases) + Data: + (0,10) 0, 0 + (1,10) 0, 0 + (2,10) 0, 0 + (3,10) 0, 0 diff --git a/hl/tools/testfiles/w-ext-two.ddl b/hl/tools/testfiles/w-ext-two.ddl new file mode 100644 index 0000000..28ff075 --- /dev/null +++ b/hl/tools/testfiles/w-ext-two.ddl @@ -0,0 +1,11 @@ +Opened "TEST.h5" with sec2 driver. +Monitoring dataset /DSET_TWO... +dimension 0: 4->6 (increases) +dimension 1: 10->12 (increases) + Data: + (0,10) 2, 2 + (1,10) 2, 2 + (2,10) 2, 2 + (3,10) 2, 2 + (4,0) 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, + (5,0) 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2 diff --git a/hl/tools/testfiles/w-help1.ddl b/hl/tools/testfiles/w-help1.ddl new file mode 100644 index 0000000..e6510f2 --- /dev/null +++ b/hl/tools/testfiles/w-help1.ddl @@ -0,0 +1,35 @@ +Usage: h5watch [OPTIONS] [OBJECT] + + OPTIONS + --help Print a usage message and exit. + --version Print version number and exit. + --label Label members of compound typed dataset. + --simple Use a machine-readable output format. + --dim Monitor changes in size of dataset dimensions only. + --width=N Set the number of columns to N for output. + A value of 0 sets the number of columns to the + maximum (65535). The default width is 80 columns. + --polling=N Set the polling interval to N (in seconds) when the + dataset will be checked for appended data. The default + polling interval is 1. + --fields=<list_of_fields> + Display data for the fields specified in <list_of_fields> + for a compound data type. <list_of_fields> can be + specified as follows: + 1) A comma-separated list of field names in a + compound data type. "," is the separator + for field names while "." is the separator + for a nested field. + 2) A single field name in a compound data type. + Can use this option multiple times. + Note that backslash is the escape character to avoid + characters in field names that conflict with the tool's + separators. + + OBJECT is specified as [<filename>/<path_to_dataset>/<dsetname>] + <filename> Name of the HDF5 file. It may be preceded by path + separated by slashes to the specified HDF5 file. + <path_to_dataset> Path separated by slashes to the specified dataset + <dsetname> Name of the dataset + + User can end the h5watch process by ctrl-C (SIGINT) or kill the process (SIGTERM). |
