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+function [curr_dat_sz, curr_lab_sz] = store2hdf5(filename, data, labels, create, startloc, chunksz)
+ % *data* is W*H*C*N matrix of images should be normalized (e.g. to lie between 0 and 1) beforehand
+ % *label* is D*N matrix of labels (D labels per sample)
+ % *create* [0/1] specifies whether to create file newly or to append to previously created file, useful to store information in batches when a dataset is too big to be held in memory (default: 1)
+ % *startloc* (point at which to start writing data). By default,
+ % if create=1 (create mode), startloc.data=[1 1 1 1], and startloc.lab=[1 1];
+ % if create=0 (append mode), startloc.data=[1 1 1 K+1], and startloc.lab = [1 K+1]; where K is the current number of samples stored in the HDF
+ % chunksz (used only in create mode), specifies number of samples to be stored per chunk (see HDF5 documentation on chunking) for creating HDF5 files with unbounded maximum size - TLDR; higher chunk sizes allow faster read-write operations
+
+ % verify that format is right
+ dat_dims=size(data);
+ lab_dims=size(labels);
+ num_samples=dat_dims(end);
+
+ assert(lab_dims(end)==num_samples, 'Number of samples should be matched between data and labels');
+
+ if ~exist('create','var')
+ create=true;
+ end
+
+
+ if create
+ %fprintf('Creating dataset with %d samples\n', num_samples);
+ if ~exist('chunksz', 'var')
+ chunksz=1000;
+ end
+ if exist(filename, 'file')
+ fprintf('Warning: replacing existing file %s \n', filename);
+ delete(filename);
+ end
+ h5create(filename, '/data', [dat_dims(1:end-1) Inf], 'Datatype', 'single', 'ChunkSize', [dat_dims(1:end-1) chunksz]); % width, height, channels, number
+ h5create(filename, '/label', [lab_dims(1:end-1) Inf], 'Datatype', 'single', 'ChunkSize', [lab_dims(1:end-1) chunksz]); % width, height, channels, number
+ if ~exist('startloc','var')
+ startloc.dat=[ones(1,length(dat_dims)-1), 1];
+ startloc.lab=[ones(1,length(lab_dims)-1), 1];
+ end
+ else % append mode
+ if ~exist('startloc','var')
+ info=h5info(filename);
+ prev_dat_sz=info.Datasets(1).Dataspace.Size;
+ prev_lab_sz=info.Datasets(2).Dataspace.Size;
+ assert(prev_dat_sz(1:end-1)==dat_dims(1:end-1), 'Data dimensions must match existing dimensions in dataset');
+ assert(prev_lab_sz(1:end-1)==lab_dims(1:end-1), 'Label dimensions must match existing dimensions in dataset');
+ startloc.dat=[ones(1,length(dat_dims)-1), prev_dat_sz(end)+1];
+ startloc.lab=[ones(1,length(lab_dims)-1), prev_lab_sz(end)+1];
+ end
+ end
+
+ if ~isempty(data)
+ h5write(filename, '/data', single(data), startloc.dat, size(data));
+ h5write(filename, '/label', single(labels), startloc.lab, size(labels));
+ end
+
+ if nargout
+ info=h5info(filename);
+ curr_dat_sz=info.Datasets(1).Dataspace.Size;
+ curr_lab_sz=info.Datasets(2).Dataspace.Size;
+ end
+end