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Diffstat (limited to 'matlab/caffe/hdf5creation/store2hdf5.m')
-rw-r--r-- | matlab/caffe/hdf5creation/store2hdf5.m | 59 |
1 files changed, 59 insertions, 0 deletions
diff --git a/matlab/caffe/hdf5creation/store2hdf5.m b/matlab/caffe/hdf5creation/store2hdf5.m new file mode 100644 index 00000000..0a0016dc --- /dev/null +++ b/matlab/caffe/hdf5creation/store2hdf5.m @@ -0,0 +1,59 @@ +function [curr_dat_sz, curr_lab_sz] = store2hdf5(filename, data, labels, create, startloc, chunksz) + % *data* is W*H*C*N matrix of images should be normalized (e.g. to lie between 0 and 1) beforehand + % *label* is D*N matrix of labels (D labels per sample) + % *create* [0/1] specifies whether to create file newly or to append to previously created file, useful to store information in batches when a dataset is too big to be held in memory (default: 1) + % *startloc* (point at which to start writing data). By default, + % if create=1 (create mode), startloc.data=[1 1 1 1], and startloc.lab=[1 1]; + % if create=0 (append mode), startloc.data=[1 1 1 K+1], and startloc.lab = [1 K+1]; where K is the current number of samples stored in the HDF + % chunksz (used only in create mode), specifies number of samples to be stored per chunk (see HDF5 documentation on chunking) for creating HDF5 files with unbounded maximum size - TLDR; higher chunk sizes allow faster read-write operations + + % verify that format is right + dat_dims=size(data); + lab_dims=size(labels); + num_samples=dat_dims(end); + + assert(lab_dims(end)==num_samples, 'Number of samples should be matched between data and labels'); + + if ~exist('create','var') + create=true; + end + + + if create + %fprintf('Creating dataset with %d samples\n', num_samples); + if ~exist('chunksz', 'var') + chunksz=1000; + end + if exist(filename, 'file') + fprintf('Warning: replacing existing file %s \n', filename); + delete(filename); + end + h5create(filename, '/data', [dat_dims(1:end-1) Inf], 'Datatype', 'single', 'ChunkSize', [dat_dims(1:end-1) chunksz]); % width, height, channels, number + h5create(filename, '/label', [lab_dims(1:end-1) Inf], 'Datatype', 'single', 'ChunkSize', [lab_dims(1:end-1) chunksz]); % width, height, channels, number + if ~exist('startloc','var') + startloc.dat=[ones(1,length(dat_dims)-1), 1]; + startloc.lab=[ones(1,length(lab_dims)-1), 1]; + end + else % append mode + if ~exist('startloc','var') + info=h5info(filename); + prev_dat_sz=info.Datasets(1).Dataspace.Size; + prev_lab_sz=info.Datasets(2).Dataspace.Size; + assert(prev_dat_sz(1:end-1)==dat_dims(1:end-1), 'Data dimensions must match existing dimensions in dataset'); + assert(prev_lab_sz(1:end-1)==lab_dims(1:end-1), 'Label dimensions must match existing dimensions in dataset'); + startloc.dat=[ones(1,length(dat_dims)-1), prev_dat_sz(end)+1]; + startloc.lab=[ones(1,length(lab_dims)-1), prev_lab_sz(end)+1]; + end + end + + if ~isempty(data) + h5write(filename, '/data', single(data), startloc.dat, size(data)); + h5write(filename, '/label', single(labels), startloc.lab, size(labels)); + end + + if nargout + info=h5info(filename); + curr_dat_sz=info.Datasets(1).Dataspace.Size; + curr_lab_sz=info.Datasets(2).Dataspace.Size; + end +end |