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+#! /bin/sh
+#
+# Copyright by The HDF Group.
+# Copyright by the Board of Trustees of the University of Illinois.
+# All rights reserved.
+#
+# This file is part of HDF5. The full HDF5 copyright notice, including
+# terms governing use, modification, and redistribution, is contained in
+# the COPYING file, which can be found at the root of the source code
+# distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.
+# If you do not have access to either file, you may request a copy from
+# help@hdfgroup.org.
+#
+# Tests for the h5repack tool
+#
+# Modification:
+# Pedro Vicente Nunes, 11/15/2006
+# Added $FILEN variables for file names
+#
+
+srcdir=@srcdir@
+
+USE_FILTER_SZIP="@USE_FILTER_SZIP@"
+USE_FILTER_DEFLATE="@USE_FILTER_DEFLATE@"
+
+TESTNAME=h5repack
+EXIT_SUCCESS=0
+EXIT_FAILURE=1
+
+H5REPACK=../../src/h5repack/h5repack # The tool name
+H5REPACK_BIN=`pwd`/$H5REPACK # The path of the tool binary
+
+H5DIFF=../../src/h5diff/h5diff # The h5diff tool name
+H5DIFF_BIN=`pwd`/$H5DIFF # The path of the h5diff tool binary
+
+H5DUMP=../../src/h5dump/h5dump # The h5dump tool name
+H5DUMP_BIN=`pwd`/$H5DUMP # The path of the h5dump tool binary
+
+RM='rm -rf'
+CMP='cmp'
+DIFF='diff -c'
+GREP='grep'
+CP='cp'
+DIRNAME='dirname'
+LS='ls'
+AWK='awk'
+
+H5DETECTSZIP=testh5repack_detect_szip
+H5DETECTSZIP_BIN=`pwd`/$H5DETECTSZIP
+
+
+nerrors=0
+verbose=yes
+
+# source dirs
+SRC_TOOLS="$srcdir/../.."
+SRC_TOOLS_TESTFILES="$SRC_TOOLS/testfiles"
+
+# testfiles source dirs for tools
+SRC_H5LS_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DUMP_TESTFILES="$SRC_TOOLS_TESTFILES"
+SRC_H5DIFF_TESTFILES="$SRC_TOOLS/test/h5diff/testfiles"
+SRC_H5COPY_TESTFILES="$SRC_TOOLS/test/h5copy/testfiles"
+SRC_H5REPACK_TESTFILES="$SRC_TOOLS/test/h5repack/testfiles"
+SRC_H5JAM_TESTFILES="$SRC_TOOLS/test/h5jam/testfiles"
+SRC_H5STAT_TESTFILES="$SRC_TOOLS/test/h5stat/testfiles"
+SRC_H5IMPORT_TESTFILES="$SRC_TOOLS/test/h5import/testfiles"
+
+TESTDIR=./testpack
+test -d $TESTDIR || mkdir $TESTDIR
+
+######################################################################
+# test files
+# --------------------------------------------------------------------
+# All the test files copy from source directory to test directory
+# NOTE: Keep this framework to add/remove test files.
+# Any test files from other tools can be used in this framework.
+# This list are also used for checking exist.
+# Comment '#' without space can be used.
+# --------------------------------------------------------------------
+LIST_HDF5_TEST_FILES="
+$SRC_H5REPACK_TESTFILES/h5repack_attr.h5
+$SRC_H5REPACK_TESTFILES/h5repack_attr_refs.h5
+$SRC_H5REPACK_TESTFILES/h5repack_deflate.h5
+$SRC_H5REPACK_TESTFILES/h5repack_early.h5
+$SRC_H5REPACK_TESTFILES/h5repack_ext.h5
+$SRC_H5REPACK_TESTFILES/h5repack_fill.h5
+$SRC_H5REPACK_TESTFILES/h5repack_filters.h5
+$SRC_H5REPACK_TESTFILES/h5repack_fletcher.h5
+$SRC_H5REPACK_TESTFILES/h5repack_hlink.h5
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5
+$SRC_H5REPACK_TESTFILES/h5repack_layouto.h5
+$SRC_H5REPACK_TESTFILES/h5repack_layout2.h5
+$SRC_H5REPACK_TESTFILES/h5repack_layout3.h5
+$SRC_H5REPACK_TESTFILES/h5repack_named_dtypes.h5
+$SRC_H5REPACK_TESTFILES/h5repack_nested_8bit_enum.h5
+$SRC_H5REPACK_TESTFILES/h5repack_nested_8bit_enum_deflated.h5
+$SRC_H5REPACK_TESTFILES/h5repack_nbit.h5
+$SRC_H5REPACK_TESTFILES/h5repack_objs.h5
+$SRC_H5REPACK_TESTFILES/h5repack_refs.h5
+$SRC_H5REPACK_TESTFILES/h5repack_shuffle.h5
+$SRC_H5REPACK_TESTFILES/h5repack_soffset.h5
+$SRC_H5REPACK_TESTFILES/h5repack_szip.h5
+$SRC_H5DIFF_TESTFILES/h5diff_attr1.h5
+$SRC_TOOLS_TESTFILES/tfamily00000.h5
+$SRC_TOOLS_TESTFILES/tfamily00001.h5
+$SRC_TOOLS_TESTFILES/tfamily00002.h5
+$SRC_TOOLS_TESTFILES/tfamily00003.h5
+$SRC_TOOLS_TESTFILES/tfamily00004.h5
+$SRC_TOOLS_TESTFILES/tfamily00005.h5
+$SRC_TOOLS_TESTFILES/tfamily00006.h5
+$SRC_TOOLS_TESTFILES/tfamily00007.h5
+$SRC_TOOLS_TESTFILES/tfamily00008.h5
+$SRC_TOOLS_TESTFILES/tfamily00009.h5
+$SRC_TOOLS_TESTFILES/tfamily00010.h5
+$SRC_TOOLS_TESTFILES/vds/1_a.h5
+$SRC_TOOLS_TESTFILES/vds/1_b.h5
+$SRC_TOOLS_TESTFILES/vds/1_c.h5
+$SRC_TOOLS_TESTFILES/vds/1_d.h5
+$SRC_TOOLS_TESTFILES/vds/1_e.h5
+$SRC_TOOLS_TESTFILES/vds/1_f.h5
+$SRC_TOOLS_TESTFILES/vds/1_vds.h5
+$SRC_TOOLS_TESTFILES/vds/2_a.h5
+$SRC_TOOLS_TESTFILES/vds/2_b.h5
+$SRC_TOOLS_TESTFILES/vds/2_c.h5
+$SRC_TOOLS_TESTFILES/vds/2_d.h5
+$SRC_TOOLS_TESTFILES/vds/2_e.h5
+$SRC_TOOLS_TESTFILES/vds/2_vds.h5
+$SRC_TOOLS_TESTFILES/vds/3_1_vds.h5
+$SRC_TOOLS_TESTFILES/vds/3_2_vds.h5
+$SRC_TOOLS_TESTFILES/vds/4_0.h5
+$SRC_TOOLS_TESTFILES/vds/4_1.h5
+$SRC_TOOLS_TESTFILES/vds/4_2.h5
+$SRC_TOOLS_TESTFILES/vds/4_vds.h5
+$SRC_TOOLS_TESTFILES/vds/5_a.h5
+$SRC_TOOLS_TESTFILES/vds/5_b.h5
+$SRC_TOOLS_TESTFILES/vds/5_c.h5
+$SRC_TOOLS_TESTFILES/vds/5_vds.h5
+"
+
+LIST_OTHER_TEST_FILES="
+$SRC_H5REPACK_TESTFILES/h5repack-help.txt
+$SRC_H5REPACK_TESTFILES/h5repack_ext.bin
+$SRC_H5REPACK_TESTFILES/ublock.bin
+$SRC_H5REPACK_TESTFILES/h5repack.info
+$SRC_H5REPACK_TESTFILES/deflate_limit.h5repack_layout.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5.ddl
+$SRC_H5REPACK_TESTFILES/h5repack_filters.h5-gzip_verbose_filters.tst
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-dset2_chunk_20x10-errstk.tst
+$SRC_H5REPACK_TESTFILES/h5repack_layout.h5-plugin_test.ddl
+$SRC_H5REPACK_TESTFILES/plugin_test.h5repack_layout.h5.tst
+$SRC_H5REPACK_TESTFILES/1_vds.h5-vds_dset_chunk20x10x5-v.ddl
+$SRC_H5REPACK_TESTFILES/2_vds.h5-vds_chunk3x6x9-v.ddl
+$SRC_H5REPACK_TESTFILES/3_1_vds.h5-vds_chunk2x5x8-v.ddl
+$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_compa-v.ddl
+$SRC_H5REPACK_TESTFILES/4_vds.h5-vds_conti-v.ddl
+"
+
+#
+# copy test files and expected output files from source dirs to test dir
+#
+COPY_TESTFILES="$LIST_HDF5_TEST_FILES $LIST_OTHER_TEST_FILES"
+
+COPY_TESTFILES_TO_TESTDIR()
+{
+ # copy test files. Used -f to make sure get a new copy
+ for tstfile in $COPY_TESTFILES
+ do
+ # ignore '#' comment
+ echo $tstfile | tr -d ' ' | grep '^#' > /dev/null
+ RET=$?
+ if [ $RET -eq 1 ]; then
+ # skip cp if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=`$DIRNAME $tstfile`
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $CP -f $tstfile $TESTDIR
+ if [ $? -ne 0 ]; then
+ echo "Error: FAILED to copy $tstfile ."
+
+ # Comment out this to CREATE expected file
+ exit $EXIT_FAILURE
+ fi
+ fi
+ fi
+ done
+}
+
+CLEAN_TESTFILES_AND_TESTDIR()
+{
+ # skip rm if srcdir is same as destdir
+ # this occurs when build/test performed in source dir and
+ # make cp fail
+ SDIR=$SRC_H5REPACK_TESTFILES
+ INODE_SDIR=`$LS -i -d $SDIR | $AWK -F' ' '{print $1}'`
+ INODE_DDIR=`$LS -i -d $TESTDIR | $AWK -F' ' '{print $1}'`
+ if [ "$INODE_SDIR" != "$INODE_DDIR" ]; then
+ $RM $TESTDIR
+ fi
+}
+
+# Print a $* message left justified in a field of 70 characters
+#
+MESSAGE() {
+ SPACES=" "
+ echo "$* $SPACES" | cut -c1-70 | tr -d '\012'
+}
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Testing".
+#
+TESTING() {
+ MESSAGE "Testing $*"
+}
+
+# Print a line-line message left justified in a field of 70 characters
+# beginning with the word "Verifying".
+#
+VERIFY() {
+ MESSAGE "Verifying $*"
+}
+
+# Print a message that a test has been skipped (because a required filter
+# was unavailable)
+SKIP() {
+ TESTING $H5REPACK $@
+ echo " -SKIP-"
+}
+
+# Call the h5diff tool
+#
+DIFFTEST()
+{
+ VERIFY h5diff output $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DIFF_BIN -q "$@"
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+
+}
+
+# Call h5repack
+#
+
+
+# call TOOLTEST_MAIN and delete $output file
+TOOLTEST()
+{
+ echo $@
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+ rm -f $outfile
+}
+
+#------------------------------------------
+# Verifying layouts of a dataset
+VERIFY_LAYOUT_DSET()
+{
+ layoutfile=layout-$1.$2
+ dset=$3
+ expectlayout=$4
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+ shift
+ shift
+
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+
+ #---------------------------------
+ # check the layout from a dataset
+ VERIFY "a dataset layout"
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DUMP_BIN -d $dset -pH $outfile > $layoutfile
+ )
+ $GREP $expectlayout $TESTDIR/$layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " PASSED"
+ else
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ fi
+
+ # clean up tmp files
+ rm -f $outfile
+ rm -f $layoutfile
+}
+
+#------------------------------------------
+# Verifying layouts of a dataset
+VERIFY_LAYOUT_VDS()
+{
+ layoutfile=layout-$1.$2
+ dset=$3
+ expectlayout=$4
+ infile=$2
+ outfile=out-$1.$2
+
+ expect="$TESTDIR/$2-$1-v.ddl"
+ actual="$TESTDIR/$2-$1-v.out"
+ actual_err="$TESTDIR/$2-$1-v.err"
+
+ shift
+ shift
+ shift
+ shift
+
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+
+ #---------------------------------
+ # check the layout from a dataset
+ VERIFY "a dataset layout"
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DUMP_BIN -d $dset -p $outfile
+ ) >$actual 2>$actual_err
+
+ cat $actual_err >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual > /dev/null 2>&1 ; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $caseless $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err
+ fi
+
+ # clean up tmp files
+ rm -f $outfile
+}
+
+#----------------------------------------
+# Verifying layouts from entire file
+VERIFY_LAYOUT_ALL()
+{
+ infile=$2
+ outfile=out-$1.$2
+ layoutfile=layout-$1.$2
+ expectlayout=$3
+ shift
+ shift
+ shift
+
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+
+
+ #---------------------------------
+ # check the layout from a dataset
+ # check if the other layouts still exsit
+ VERIFY "layouts"
+ (
+ cd $TESTDIR
+ echo
+ # if CONTIGUOUS
+ if [ $expectlayout = "CONTIGUOUS" ]; then
+ TESTING $H5DUMP_BIN -pH $outfile
+ (
+ $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+ )
+ $GREP "COMPACT" $layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ else
+ $GREP "CHUNKED" $layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+ fi
+ else
+ # if COMPACT
+ if [ $expectlayout = "COMPACT" ]; then
+ TESTING $H5DUMP_BIN -pH $outfile
+ (
+ $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+ )
+ $GREP "CHUNKED" $layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ else
+ $GREP "CONTIGUOUS" $layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+ fi
+ else
+ # if CHUNKED
+ if [ $expectlayout = "CHUNKED" ]; then
+ TESTING $H5DUMP_BIN -pH $outfile
+ (
+ $RUNSERIAL $H5DUMP_BIN -pH $outfile > $layoutfile
+ )
+ $GREP "CONTIGUOUS" $layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ else
+ $GREP "COMPACT" $layoutfile > /dev/null
+ if [ $? -eq 0 ]; then
+ echo " FAILED"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ fi
+ fi
+ fi
+ fi
+ fi
+ )
+
+ # clean up tmp files
+ rm -f $outfile
+ rm -f $layoutfile
+}
+
+# same as TOOLTEST, but it uses the old syntax -i input_file -o output_file
+#
+TOOLTEST0()
+{
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN -i $infile -o $outfile "$@"
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+ rm -f $outfile
+}
+
+
+# same as TOOLTEST, but it uses without -i -o options
+# used to test the family driver, where these files reside
+#
+TOOLTEST1()
+{
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+ rm -f $outfile
+}
+
+# This is same as TOOLTEST() with comparing display output
+# from -v option
+#
+TOOLTESTV()
+{
+ expect="$TESTDIR/$2-$1.tst"
+ actual="$TESTDIR/`basename $2 .ddl`.out"
+ actual_err="$TESTDIR/`basename $2 .ddl`.err"
+
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ ) >$actual 2>$actual_err
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+
+ # display output compare
+ STDOUT_FILTER $actual
+ cat $actual_err >> $actual
+
+ VERIFY output from $H5REPACK $@
+ if cmp -s $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.tst) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
+ fi
+
+ rm -f $actual $actual_err
+ rm -f $outfile
+}
+
+# same as TOOLTESTV but filters error stack output and compares to an error file
+# Extract file name, line number, version and thread IDs because they may be different
+# ADD_H5ERR_MASK_TEST
+TOOLTESTM() {
+
+ expect="$TESTDIR/$2-$1.tst"
+ actual="$TESTDIR/`basename $2 .tst`.out"
+ actual_err="$TESTDIR/`basename $2 .tst`.oerr"
+ actual_sav=${actual}-sav
+ actual_err_sav=${actual_err}-sav
+
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ ) >$actual 2>$actual_err
+
+ # save actual and actual_err in case they are needed later.
+ cp $actual $actual_sav
+ cp $actual_err $actual_err_sav
+
+ # Extract file name, line number, version and thread IDs because they may be different
+ sed -e 's/thread [0-9]*/thread (IDs)/' -e 's/: .*\.c /: (file name) /' \
+ -e 's/line [0-9]*/line (number)/' \
+ -e 's/v[1-9]*\.[0-9]*\./version (number)\./' \
+ -e 's/[1-9]*\.[0-9]*\.[0-9]*[^)]*/version (number)/' \
+ -e 's/H5Eget_auto[1-2]*/H5Eget_auto(1 or 2)/' \
+ -e 's/H5Eset_auto[1-2]*/H5Eset_auto(1 or 2)/' \
+ $actual_err > $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect
+ elif $CMP $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.tst) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && $DIFF $expect $actual |sed 's/^/ /'
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err $actual_sav $actual_err_sav
+ fi
+
+}
+
+# This is same as TOOLTESTV() with comparing h5dump output
+# from -pH option
+#
+TOOLTEST_DUMP()
+{
+ infile=$2
+ outfile=out-$1.$2
+ expect="$TESTDIR/$1.$2.ddl"
+ actual="$TESTDIR/out-$1.$2.out"
+ actual_err="$TESTDIR/out-$1.$2.err"
+
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ ) >$actual 2>$actual_err
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ VERIFY h5dump output $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5DUMP_BIN -pH $outfile
+ ) >$actual 2>$actual_err
+ cat $actual_err >> $actual
+
+ RET=$?
+
+ fi
+
+ if cmp -s $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected result (*.ddl) differs from actual result (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ test yes = "$verbose" && diff -c $expect $actual |sed 's/^/ /'
+ fi
+
+ rm -f $actual $actual_err
+ rm -f $outfile
+}
+
+# TOOLTEST_META:
+# Test metadata block size option.
+# Reason to create a function here is to localize all special steps related to
+# metadata block size option in one place. This is a quick solution. More
+# thought out solution needed when there is more time.
+#
+# $1: test input file
+# $2:$: metadata options (either "-M size" or "--metadata_block_size=size")
+#
+# Algorithm:
+# Run it once without the metadata option ($2-$);
+# Save the result output file;
+# Run it second time with the metadata option;
+# Verify the output file of second run is larger than the one of 1st run.
+TOOLTEST_META()
+{
+ infile=$2
+ outfile=out-$1.$2
+ shift
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+ # get the size of the first output file
+ size1=`wc -c $TESTDIR/$outfile | cut -d' ' -f1`
+
+ # 2nd run with metadata option
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@" $infile $outfile
+ )
+ RET=$?
+ if [ $RET != 0 ] ; then
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ else
+ echo " PASSED"
+ DIFFTEST $infile $outfile
+ fi
+ # get the size of the second output file
+ size2=`wc -c $TESTDIR/$outfile | cut -d' ' -f1`
+
+ # verify sizes.
+ MESSAGE "Verify the sizes of both output files ($size1 vs $size2)"
+ if [ $size1 -lt $size2 ]; then
+ # pass
+ echo " PASSED"
+ else
+ #fail
+ echo "*FAILED*"
+ nerrors="`expr $nerrors + 1`"
+ fi
+
+ rm -f $outfile
+}
+
+# ADD_HELP_TEST
+TOOLTEST_HELP() {
+
+ expect="$TESTDIR/$1"
+ actual="$TESTDIR/`basename $1 .txt`.out"
+ actual_err="$TESTDIR/`basename $1 .txt`.err"
+ shift
+
+ # Run test.
+ TESTING $H5REPACK $@
+ (
+ cd $TESTDIR
+ $RUNSERIAL $H5REPACK_BIN "$@"
+ ) >$actual 2>$actual_err
+ cat $actual_err >> $actual
+
+ if [ ! -f $expect ]; then
+ # Create the expect data file if it doesn't yet exist.
+ echo " CREATED"
+ cp $actual $expect-CREATED
+ elif cmp -s $expect $actual; then
+ echo " PASSED"
+ else
+ echo "*FAILED*"
+ echo " Expected output (*.txt) differs from actual output (*.out)"
+ nerrors="`expr $nerrors + 1`"
+ fi
+
+ # Clean up output file
+ if test -z "$HDF5_NOCLEANUP"; then
+ rm -f $actual $actual_err
+ fi
+
+}
+
+# This is different from $srcdir/../../../bin/output_filter.sh
+STDOUT_FILTER() {
+ result_file=$1
+ tmp_file=/tmp/h5test_tmp_$$
+ # Filter name of files.
+ cp $result_file $tmp_file
+ sed -e '/^Opening file/d' -e '/^Making file/d' \
+ < $tmp_file > $result_file
+ # cleanup
+ rm -f $tmp_file
+}
+
+#
+# The tests
+# We use the files generated by h5repacktst
+# Each run generates "<file>.out.h5" and the tool h5diff is used to
+# compare the input and output files
+#
+# the tests are the same as the program h5repacktst, but run from the CLI
+#
+
+# See which filters are usable (and skip tests for filters we
+# don't have). Do this by searching H5pubconf.h to see which
+# filters are defined.
+
+# detect whether the encoder is present.
+USE_FILTER_SZIP_ENCODER="no";
+if test $USE_FILTER_SZIP = "yes"; then
+USE_FILTER_SZIP_ENCODER=`$RUNSERIAL $H5DETECTSZIP_BIN`
+fi
+
+##############################################################################
+### T H E T E S T S
+##############################################################################
+# prepare for test
+COPY_TESTFILES_TO_TESTDIR
+
+TOOLTEST_HELP h5repack-help.txt -h
+
+# copy files (these files have no filters)
+TOOLTEST fill h5repack_fill.h5
+TOOLTEST objs h5repack_objs.h5
+TOOLTEST attr h5repack_attr.h5
+TOOLTEST hlink h5repack_hlink.h5
+TOOLTEST layout h5repack_layout.h5
+TOOLTEST early h5repack_early.h5
+
+# nested 8bit enum in both deflated and non-deflated datafiles
+if [ $USE_FILTER_DEFLATE != "yes" ]; then
+TOOLTEST nested_8bit_enum h5repack_nested_8bit_enum.h5
+else
+TOOLTEST nested_8bit_enum h5repack_nested_8bit_enum_deflated.h5
+fi
+
+# use h5repack_layout.h5 to write some filters (this file has no filters)
+
+# gzip with individual object
+arg="h5repack_layout.h5 -f dset1:GZIP=1 -l dset1:CHUNK=20x10"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST gzip_individual $arg
+fi
+
+# gzip for all
+arg="h5repack_layout.h5 -f GZIP=1"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST gzip_all $arg
+fi
+
+# szip with individual object
+arg="h5repack_layout.h5 -f dset2:SZIP=8,EC -l dset2:CHUNK=20x10"
+if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST szip_individual $arg
+fi
+
+# szip for all
+arg="h5repack_layout.h5 -f SZIP=8,NN"
+if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST szip_all $arg
+fi
+
+# shuffle with individual object
+arg="h5repack_layout.h5 -f dset2:SHUF -l dset2:CHUNK=20x10"
+TOOLTEST shuffle_individual $arg
+
+
+# shuffle for all
+arg="h5repack_layout.h5 -f SHUF"
+TOOLTEST shuffle_all $arg
+
+# fletcher32 with individual object
+arg="h5repack_layout.h5 -f dset2:FLET -l dset2:CHUNK=20x10"
+TOOLTEST fletcher_individual $arg
+
+# fletcher32 for all
+arg="h5repack_layout.h5 -f FLET"
+TOOLTEST fletcher_all $arg
+
+# all filters
+arg="h5repack_layout.h5 -f dset2:SHUF -f dset2:FLET -f dset2:SZIP=8,NN -f dset2:GZIP=1 -l dset2:CHUNK=20x10"
+if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST all_filters $arg
+fi
+
+# verbose gzip with individual object
+arg="h5repack_filters.h5 -v -f /dset_deflate:GZIP=9"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ # compare output
+ TOOLTESTV gzip_verbose_filters $arg
+fi
+
+###########################################################
+# the following tests assume the input files have filters
+###########################################################
+
+# szip copy
+arg="h5repack_szip.h5"
+if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST szip_copy $arg
+fi
+
+# szip remove
+arg="h5repack_szip.h5 --filter=dset_szip:NONE"
+if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST szip_remove $arg
+fi
+
+# deflate copy
+arg="h5repack_deflate.h5"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST deflate_copy $arg
+fi
+
+# deflate remove
+arg="h5repack_deflate.h5 -f dset_deflate:NONE"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST deflate_remove $arg
+fi
+
+# shuffle copy
+arg="h5repack_shuffle.h5"
+TOOLTEST shuffle_copy $arg
+
+# shuffle remove
+arg="h5repack_shuffle.h5 -f dset_shuffle:NONE"
+TOOLTEST shuffle_remove $arg
+
+# fletcher32 copy
+arg="h5repack_fletcher.h5"
+TOOLTEST fletcher_copy $arg
+
+# fletcher32 remove
+arg="h5repack_fletcher.h5 -f dset_fletcher32:NONE"
+TOOLTEST fletcher_remove $arg
+
+# nbit copy
+arg="h5repack_nbit.h5"
+TOOLTEST nbit_copy $arg
+
+# nbit remove
+arg="h5repack_nbit.h5 -f dset_nbit:NONE"
+TOOLTEST nbit_remove $arg
+
+# nbit add
+arg="h5repack_nbit.h5 -f dset_int31:NBIT"
+TOOLTEST nbit_add $arg
+
+# scaleoffset copy
+arg="h5repack_soffset.h5"
+TOOLTEST scale_copy $arg
+
+# scaleoffset add
+arg="h5repack_soffset.h5 -f dset_none:SOFF=31,IN"
+TOOLTEST scale_add $arg
+
+# scaleoffset remove
+arg="h5repack_soffset.h5 -f dset_scaleoffset:NONE"
+TOOLTEST scale_remove $arg
+
+# remove all filters
+arg="h5repack_filters.h5 -f NONE"
+if test $USE_FILTER_DEFLATE != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST remove_all $arg
+fi
+
+#filter conversions
+
+arg="h5repack_deflate.h5 -f dset_deflate:SZIP=8,NN"
+if test $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_SZIP != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST deflate_convert $arg
+fi
+
+arg="h5repack_szip.h5 -f dset_szip:GZIP=1"
+if test $USE_FILTER_SZIP != "yes" -o $USE_FILTER_SZIP_ENCODER != "yes" -o $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST szip_convert $arg
+fi
+
+
+#limit
+arg="h5repack_layout.h5 -f GZIP=1 -m 1024"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST_DUMP deflate_limit $arg
+fi
+
+#file
+arg="h5repack_layout.h5 -e h5repack.info"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST deflate_file $arg
+fi
+
+#########################################################
+# layout options (these files have no filters)
+#########################################################
+VERIFY_LAYOUT_DSET dset2_chunk_20x10 h5repack_layout.h5 dset2 CHUNKED --layout dset2:CHUNK=20x10
+
+VERIFY_LAYOUT_ALL chunk_20x10 h5repack_layout.h5 CHUNKED -l CHUNK=20x10
+
+VERIFY_LAYOUT_DSET dset2_conti h5repack_layout.h5 dset2 CONTIGUOUS -l dset2:CONTI
+
+VERIFY_LAYOUT_ALL conti h5repack_layout.h5 CONTIGUOUS -l CONTI
+
+VERIFY_LAYOUT_DSET dset2_compa h5repack_layout.h5 dset2 COMPACT -l dset2:COMPA
+
+VERIFY_LAYOUT_ALL compa h5repack_layout.h5 COMPACT -l COMPA
+
+TOOLTESTM dset2_chunk_20x10-errstk h5repack_layout.h5 --layout=dset2:CHUNK=20x10x5 --enable-error-stack
+
+################################################################
+# layout conversions (file has no filters)
+###############################################################
+
+VERIFY_LAYOUT_DSET dset_compa_conti h5repack_layout.h5 dset_compact CONTIGUOUS -l dset_compact:CONTI
+
+VERIFY_LAYOUT_DSET dset_compa_chunk h5repack_layout.h5 dset_compact CHUNKED -l dset_compact:CHUNK=2x5
+
+VERIFY_LAYOUT_DSET dset_compa_compa h5repack_layout.h5 dset_compact COMPACT -l dset_compact:COMPA
+
+VERIFY_LAYOUT_DSET dset_conti_compa h5repack_layout.h5 dset_contiguous COMPACT -l dset_contiguous:COMPA
+
+VERIFY_LAYOUT_DSET dset_conti_chunk h5repack_layout.h5 dset_contiguous CHUNKED -l dset_contiguous:CHUNK=3x6
+
+VERIFY_LAYOUT_DSET dset_conti_conti h5repack_layout.h5 dset_contiguous CONTIGUOUS -l dset_contiguous:CONTI
+
+VERIFY_LAYOUT_DSET chunk_compa h5repack_layout.h5 dset_chunk COMPACT -l dset_chunk:COMPA
+
+VERIFY_LAYOUT_DSET chunk_conti h5repack_layout.h5 dset_chunk CONTIGUOUS -l dset_chunk:CONTI
+
+VERIFY_LAYOUT_DSET chunk_18x13 h5repack_layout.h5 dset_chunk CHUNKED -l dset_chunk:CHUNK=18x13
+
+# test convert small size dataset ( < 1k) to compact layout without -m
+VERIFY_LAYOUT_DSET contig_small_compa h5repack_layout2.h5 contig_small COMPACT -l contig_small:COMPA
+
+VERIFY_LAYOUT_DSET contig_small_fixed_compa h5repack_layout2.h5 chunked_small_fixed COMPACT -l chunked_small_fixed:COMPA
+
+#---------------------------------------------------------------------------
+# Test file contains chunked datasets (need multiple dsets) with
+# unlimited max dims. (HDFFV-7933)
+# Use first dset to test.
+#---------------------------------------------------------------------------
+# chunk to chunk - specify chunk dim bigger than any current dim
+VERIFY_LAYOUT_DSET chunk2chunk h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:CHUNK=100x300
+
+# chunk to contiguous
+VERIFY_LAYOUT_DSET chunk2conti h5repack_layout3.h5 chunk_unlimit1 CONTI -l chunk_unlimit1:CONTI
+
+# chunk to compact - convert big dataset (should be > 64k) for this purpose,
+# should remain as original layout (chunk)
+VERIFY_LAYOUT_DSET chunk2compa h5repack_layout3.h5 chunk_unlimit1 CHUNK -l chunk_unlimit1:COMPA
+
+#--------------------------------------------------------------------------
+# Test -f for some specific cases. Chunked dataset with unlimited max dims.
+# (HDFFV-8012)
+#--------------------------------------------------------------------------
+# - should not fail
+# - should not change max dims from unlimit
+
+# chunk dim is bigger than dataset dim. ( dset size < 64k )
+VERIFY_LAYOUT_DSET error1 h5repack_layout3.h5 chunk_unlimit1 H5S_UNLIMITED -f chunk_unlimit1:NONE
+# chunk dim is bigger than dataset dim. ( dset size > 64k )
+VERIFY_LAYOUT_DSET error2 h5repack_layout3.h5 chunk_unlimit2 H5S_UNLIMITED -f chunk_unlimit2:NONE
+
+# chunk dims are smaller than dataset dims. ( dset size < 64k )
+#TOOLTEST_MAIN h5repack_layout3.h5 -f chunk_unlimit3:NONE
+VERIFY_LAYOUT_DSET error3 h5repack_layout3.h5 chunk_unlimit3 H5S_UNLIMITED -f chunk_unlimit3:NONE
+
+# file input - should not fail
+TOOLTEST error4 h5repack_layout3.h5 -f NONE
+
+#--------------------------------------------------------------------------
+# Test base: Convert CHUNK to CONTI for a chunked dataset with small dataset
+# (dset size < 64K) and with unlimited max dims on a condition as follow.
+# (HDFFV-8214)
+#--------------------------------------------------------------------------
+
+# chunk dim is bigger than dataset dim. should succeed.
+VERIFY_LAYOUT_DSET ckdim_biger h5repack_layout3.h5 chunk_unlimit2 CONTI -l chunk_unlimit2:CONTI
+# chunk dim is smaller than dataset dim. should succeed.
+VERIFY_LAYOUT_DSET ckdim_smaller h5repack_layout3.h5 chunk_unlimit3 CONTI -l chunk_unlimit3:CONTI
+
+
+# Native option
+# Do not use FILE1, as the named dtype will be converted to native, and h5diff will
+# report a difference.
+TOOLTEST native_fill h5repack_fill.h5 -n
+TOOLTEST native_attr h5repack_attr.h5 -n
+
+
+# latest file format with long switches. use FILE4=h5repack_layout.h5 (no filters)
+arg="h5repack_layout.h5 --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ VERIFY_LAYOUT_ALL layout_long_switches h5repack_layout.h5 CHUNKED --layout CHUNK=20x10 --filter GZIP=1 --minimum=10 --native --latest --compact=8 --indexed=6 --ssize=8[:dtype]
+fi
+
+# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
+arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ VERIFY_LAYOUT_ALL layout_short_switches h5repack_layout.h5 CHUNKED -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]
+fi
+
+# several global filters
+
+arg="h5repack_layout.h5 --filter GZIP=1 --filter SHUF"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST global_filters $arg
+fi
+
+# syntax of -i infile -o outfile
+# latest file format with short switches. use FILE4=h5repack_layout.h5 (no filters)
+arg="h5repack_layout.h5 -l CHUNK=20x10 -f GZIP=1 -m 10 -n -L -c 8 -d 6 -s 8[:dtype]"
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP $arg
+else
+ TOOLTEST0 old_style_layout_short_switches $arg
+fi
+
+# add a userblock to file
+arg="h5repack_objs.h5 -u ublock.bin -b 2048"
+TOOLTEST add_userblock $arg
+
+# add alignment
+arg="h5repack_objs.h5 -t 1 -a 1 "
+TOOLTEST add_alignment $arg
+
+# Check repacking file with old version of layout message (should get upgraded
+# to new version and be readable, etc.)
+TOOLTEST upgrade_layout h5repack_layouto.h5
+
+# test for datum size > H5TOOLS_MALLOCSIZE
+TOOLTEST gt_mallocsize h5repack_objs.h5 -f GZIP=1
+
+# Check repacking file with committed datatypes in odd configurations
+TOOLTEST committed_dt h5repack_named_dtypes.h5
+
+# tests family driver (file is located in common testfiles folder, uses TOOLTEST1
+TOOLTEST1 family tfamily%05d.h5
+
+# test various references (bug 1814 and 1726)
+TOOLTEST bug1814 h5repack_refs.h5
+
+# test attribute with various references (bug1797 / HDFFV-5932)
+# the references in attribute of compund or vlen datatype
+TOOLTEST HDFFV-5932 h5repack_attr_refs.h5
+
+# Add test for memory leak in attirbute. This test is verified by CTEST.
+# 1. leak from vlen string
+# 2. leak from compound type without reference member
+# (HDFFV-7840, )
+# Note: this test is experimental for sharing test file among tools
+TOOLTEST HDFFV-7840 h5diff_attr1.h5
+
+# tests for metadata block size option
+TOOLTEST_META meta_short h5repack_layout.h5 -M 8192
+TOOLTEST_META meta_long h5repack_layout.h5 --metadata_block_size=8192
+
+# VDS tests
+
+################################################################
+# layout conversions
+###############################################################
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP vds_dset_chunk_20x10x5
+else
+ VERIFY_LAYOUT_VDS vds_dset_chunk_20x10x5 1_vds.h5 vds_dset CHUNKED --layout vds_dset:CHUNK=20x10x5
+fi
+
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP vds_chunk2x5x8
+else
+ VERIFY_LAYOUT_VDS vds_chunk2x5x8 3_1_vds.h5 vds_dset CHUNKED -l vds_dset:CHUNK=2x5x8
+fi
+
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP vds_chunk3x6x9
+else
+ VERIFY_LAYOUT_VDS vds_chunk3x6x9 2_vds.h5 vds_dset CHUNKED -l vds_dset:CHUNK=3x6x9
+fi
+
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP vds_compa 4_vds.h5
+else
+ VERIFY_LAYOUT_VDS vds_compa 4_vds.h5 vds_dset COMPACT -l vds_dset:COMPA
+fi
+
+if test $USE_FILTER_DEFLATE != "yes" ; then
+ SKIP vds_conti 4_vds.h5
+else
+ VERIFY_LAYOUT_VDS vds_conti 4_vds.h5 vds_dset CONTIGUOUS -l vds_dset:CONTI
+fi
+
+# Clean up temporary files/directories
+CLEAN_TESTFILES_AND_TESTDIR
+
+if test $nerrors -eq 0 ; then
+ echo "All $TESTNAME tests passed."
+ exit $EXIT_SUCCESS
+else
+ echo "$TESTNAME tests failed with $nerrors errors."
+ exit $EXIT_FAILURE
+fi
+
generated by cgit v1.2.3 (git 2.25.1) at 2024-04-18 12:28:39 +0000